Dcer021679.1
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- -
- Assembly
- GCA_949768715.1
- Location
- OX458320.1:26417742-26421785[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.2e-05 0.0034 18.8 0.3 2 23 134 155 133 155 0.97 2 20 1.6e-06 0.00011 23.6 0.5 1 23 175 197 175 197 0.98 3 20 4e-07 2.6e-05 25.5 3.0 1 23 203 225 203 225 0.98 4 20 1.3e-05 0.00089 20.7 2.1 1 23 231 253 231 253 0.98 5 20 0.00048 0.031 15.8 0.4 2 23 260 281 259 281 0.96 6 20 7.1e-07 4.7e-05 24.7 2.1 1 23 286 308 286 308 0.98 7 20 2.5 1.7e+02 4.1 0.0 7 23 311 327 311 327 0.93 8 20 1.5e-05 0.001 20.5 0.7 1 23 333 355 333 355 0.97 9 20 1.2e-07 8.1e-06 27.1 0.6 1 23 361 383 361 383 0.98 10 20 2.1e-05 0.0014 20.1 3.1 1 23 389 411 389 411 0.97 11 20 5.5e-05 0.0037 18.7 2.2 1 23 417 439 417 439 0.98 12 20 5.7e-05 0.0038 18.7 1.6 1 23 445 467 445 467 0.98 13 20 0.00041 0.027 16.0 1.2 1 23 473 494 473 494 0.97 14 20 2.9e-06 0.00019 22.8 0.1 1 23 500 522 500 522 0.98 15 20 1.5e-05 0.001 20.5 1.9 1 23 528 550 528 550 0.98 16 20 4.8e-06 0.00032 22.1 2.2 2 23 557 578 556 578 0.95 17 20 2e-06 0.00013 23.3 3.5 1 23 584 606 584 606 0.97 18 20 1.6e-05 0.0011 20.4 0.8 2 23 613 634 612 634 0.97 19 20 0.00075 0.049 15.2 3.3 1 23 640 662 640 662 0.98 20 20 4.2e-05 0.0027 19.1 2.2 1 23 668 690 668 691 0.96
Sequence Information
- Coding Sequence
- ATGGCCGATGTTGTGGCTGAACTTCACCCAATGGAAGTGGTACTTCTGATCGATGCTTATTCTATGATAAGGATGGAGAATTGTGATTCAATTGAATTCAAAACTGAACTGGAAGCTCTTGTTGCAAAAGATGAATTTGCCGCTGAAAATTTTGTTGCCATTAAGACACAGGTTAAAACTGAACCCTCAAAATACAATGatcaattcaattatttttccgAGGACGCGGTTACATCAACAATAAGCAATTCTGGATTACCGGAAAACTTAAAGGAAGAAGGTGACATCGACCAACATCCTTTCACTGCGCCCTCAAATCAAGACGAAATCGAAATCGAAAAGTGCGAACTAAACTTTGACTTTGTTTCACCAGACGAGTTTCTCAAAGTAGCGAAGCTCGAGTGTGGCGAATGTGGAAGCTGTTTCGTCGACACTGACCAACTTGAGGAACATTTACGAACCCACGCTCTTGATAAATCCAAACGCAACCGAAAAACAAAGGTCGTGTATGAAGACAGGTTCTTTAAATGCGACGTTTGCAATAAAGCTTTTGCGCTAAGTGGCAATCTCAAAAGGCACATGTTCGTTCATGAAGGAGAGAAGCCCTTTAAGTGCAATGAGTGCCATAAAGCTTTCACGCAAAGGGGCAACCTCAAATATCACATGCTGGTTCATAAAGGAGAGACTCCGTTTAAGTGCACCGAGTGCAATAAAGGTTTCAAGGCCAAGGGCACTCTCAAATCGCACATGTTCACTCACGCCGACAAGGAACCTTTAAAGTGCCAACTGTGCGATAAAGCTTTCGTCCATGGCGGTGTGCTCAAGAAACACATGGCAATTCACGAGCGCAAGGCCTTCAAGTGCCACTTATGTGATGAAACTTTCAGCTTTAAGAGTAACCTCAATGCGCACTTGTTAGTGCATAAGGGTGGTAAACCCCTTAGtgacaaaaagtttttaaaaaatcacataaTAGTTCACGAGGGGAAGAAACGTTTCGCGTGCCACTTATGTGATAAAACTTTCACCGTTAGCGGTGGCCTGCGAACGCACTTATTAGTCCATAGCGGAGAGAAGCCCTTTAAGTGCAACATGTGCGATAGAGCTTTCACAACCAGCGCTCTTCTCCGCAGGCACATGTTGGTTCATAAGAGCGATAAACCTTTTGAGTGCACGGTGTGCACTAAGCGTTTTGTATCCAAGCAACATCTCAAAATTCACATGTTCATTCACGACGACGAGGGAACCTTCAAGTGCGATGTGtgcaataaaacttttaaacaaTACCGCAGCCTCAGCGAGCACAAATTGATTCACAAGGACAAAAGGGCGTTCAAATGCGACTTGTGCGATCAAGCATTCAACCACAGCAACAGTCTCAGAGTGCACTTGCTGAATCATAAAGGCGAGAAACCGTTCAAGTGCAAAGTGTGCAATAAAGGTTTCACTCAAAACGTGCTCAAAAGTCACATGTTGATCCACAGCGAAGAAAAGCCTTTCAAGTGCGACGTTTGCGGGAAAGGTTTCGCTGGAAAAGTCAATCTCACTCGACACGTGTTGATCCACACCGGTGAGAAACCCCACAAGTGCACCGAGTGCGATAAAGCTTTTCAACAGAAGCGCAGCCTCACCATACACCTGTTGGTTCATAAGGGCGAGAGACCCTGCATATGCCACGTGTGCGGAAAAGCGTTCACGCACGCCGTCCAGCTCAAAGCGCACATGGTGGTTCACGAAAGCGAGAAAATCTTCAAATGCGACCAGTGTGATAAAGGCTTTACGCGAAGCCACAATTTGAAAGTGCACATGTTTTTGCATAGCGCTGAGAAGACCTTGAAATGCGACGTTTGCGACAAAACGTTTGTGCTTGACGGCCAcctcaaaagacacatgttggtTCACAGTGAGGAGAGACCCTTTAAATGCCACGTGTGCGAGAAATGTTTCAAGGAAGGTCGCGTTCTTAAAGCGCACATGTTGGTTCACACCGGCGAAAAGGCTTATGAGTGCACCGTTTGTAATAACTCTTTCACGGCAAAAAGCAGTCTGTTGACGCACATGTCGACACATCACGGCGATAAAAGACAAAAGAAGACTGTTGAAAATCGCTTGTTGGTGGAAGAATCGTCGGATAGCACAGAATAG
- Protein Sequence
- MADVVAELHPMEVVLLIDAYSMIRMENCDSIEFKTELEALVAKDEFAAENFVAIKTQVKTEPSKYNDQFNYFSEDAVTSTISNSGLPENLKEEGDIDQHPFTAPSNQDEIEIEKCELNFDFVSPDEFLKVAKLECGECGSCFVDTDQLEEHLRTHALDKSKRNRKTKVVYEDRFFKCDVCNKAFALSGNLKRHMFVHEGEKPFKCNECHKAFTQRGNLKYHMLVHKGETPFKCTECNKGFKAKGTLKSHMFTHADKEPLKCQLCDKAFVHGGVLKKHMAIHERKAFKCHLCDETFSFKSNLNAHLLVHKGGKPLSDKKFLKNHIIVHEGKKRFACHLCDKTFTVSGGLRTHLLVHSGEKPFKCNMCDRAFTTSALLRRHMLVHKSDKPFECTVCTKRFVSKQHLKIHMFIHDDEGTFKCDVCNKTFKQYRSLSEHKLIHKDKRAFKCDLCDQAFNHSNSLRVHLLNHKGEKPFKCKVCNKGFTQNVLKSHMLIHSEEKPFKCDVCGKGFAGKVNLTRHVLIHTGEKPHKCTECDKAFQQKRSLTIHLLVHKGERPCICHVCGKAFTHAVQLKAHMVVHESEKIFKCDQCDKGFTRSHNLKVHMFLHSAEKTLKCDVCDKTFVLDGHLKRHMLVHSEERPFKCHVCEKCFKEGRVLKAHMLVHTGEKAYECTVCNNSFTAKSSLLTHMSTHHGDKRQKKTVENRLLVEESSDSTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -