Dcer017339.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dascillus cervinus
Gene Symbol
-
Assembly
GCA_949768715.1
Location
OX458320.1:7302767-7309053[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.00025 0.016 16.7 0.8 1 23 59 81 59 81 0.98
2 24 0.00013 0.0085 17.6 0.8 1 23 87 109 87 109 0.98
3 24 2.4e-05 0.0016 19.9 0.0 1 23 115 137 115 137 0.98
4 24 1.2e-05 0.00079 20.8 1.4 1 23 140 162 140 162 0.98
5 24 3.8e-05 0.0025 19.3 2.1 1 23 168 190 168 190 0.98
6 24 0.00016 0.01 17.3 0.9 1 23 196 218 196 218 0.97
7 24 0.0079 0.52 12.0 3.2 1 23 224 246 224 246 0.94
8 24 0.0019 0.13 13.9 0.0 1 23 252 274 252 274 0.97
9 24 9.3e-05 0.0062 18.0 5.6 1 23 280 302 280 302 0.97
10 24 8.6e-05 0.0057 18.1 0.4 1 23 308 330 308 330 0.98
11 24 2.9e-05 0.0019 19.6 0.5 1 23 336 358 336 358 0.98
12 24 0.00039 0.026 16.1 2.9 1 23 377 399 377 399 0.98
13 24 5.9e-06 0.00039 21.8 2.8 1 23 405 427 405 427 0.98
14 24 5.8e-05 0.0038 18.7 2.2 1 23 433 455 433 455 0.98
15 24 1.1e-05 0.0007 21.0 0.4 1 23 461 483 461 483 0.97
16 24 8.9e-06 0.00059 21.2 2.9 1 23 489 511 489 511 0.98
17 24 8.3e-05 0.0054 18.2 4.0 1 23 517 539 517 539 0.98
18 24 3.8e-05 0.0025 19.3 2.3 1 23 545 567 545 567 0.96
19 24 0.0002 0.013 17.0 1.1 1 23 573 595 573 595 0.98
20 24 6.8e-06 0.00045 21.6 3.1 1 23 601 623 601 623 0.97
21 24 2e-05 0.0013 20.2 1.2 1 23 629 651 629 651 0.98
22 24 4.6e-07 3e-05 25.3 0.6 1 23 657 679 657 679 0.99
23 24 2.5e-06 0.00017 23.0 2.0 1 23 685 707 685 707 0.98
24 24 1.3e-07 8.4e-06 27.1 4.1 1 23 713 735 713 735 0.98

Sequence Information

Coding Sequence
ATGGAGAATTATTGCGATTCAATTAAAGTTGAAGCAGAGGAACTTGTTATAAAAGATGAATATGATGATGCGGAAGAAGACAATCAAAATGGTAGTTTGCCAAGAAGTTTTCTTCCAATCTGTACAGACAACCTTATCGTTAAAACGgagcTCAAGCATAACGGCGAGAAACCCTTCAAATGTGACCAGTGTGATAGAGCTTTTCTAGAGAACCGCAACCTTAAAACACACATGATAATGCATATGGACGTGAAACCGTTTAAATGCTACTTGTGCGATGCATCCTTTACTCGAAGTGGCCGTCTCAAATCGCACATACTGCTTCACACAGGCGAGAAACCCTTCAAGTGTACCCAGTGCGATGCAGCTTTTGCAGAAAACGGCGACCTTGAAAGACACATGATAGTTCACAATCCGTTTAAATGCGACTTGTGTAATACAACTTATACTCGAAAAGGCGGCCTCAAATTACACATGTTGCGCCACACGGGCGAAAAACCCTTCAAATGCAATCTGTGCGATAAATTCTTTTTCAATAATGCCCGACTTAAAAcgcacatgttaattcataaaAACGAAAAGCCTTTTAAATGCAACCAGTGTGACAAATCTTTTCGAGAAAACATCATCCTCAAAAGGCACATGGTGATTCACATGGACGAGAAACCGTTTAGGTGCCACCTTTGCGATAAAGGTTTCAACTACAAGCACACACTCGAACCACACGTGTTGCTTCACAACAGcgaaaaaccctttaaatgtgACCAGTGTGATAAAGCTTTTCTAGCGAACGGGGCCCTTAAAGCGCACATGGTAATTCATTCGGGTGAGAAACCGTTTAAATGCCACTCGTGTAATAAATCTTTTAAACGAAGCGGCAGTCTCAAATCTCACAATTTGCGACACAAAGACGAGACACCCTTTAAATGCGACGTGTGCGATAAATTTTTTGTCTCCAATGGCATCCTGAAaacgcacatgttgattcataaaggCGAAAAGCCGTTCAAATGTGACCAGTGTGATAAAGCCTTTTTACAGAGCGGAAGccttaaaaaacacatatTAGTTCACAAGAGTGCCAGAACTCTGAAGGCGCTCTTATTGGTGCAAACGGGCGGGAAACCTTTCAAATGTGCCCAGTGTGACAAAGCTTTTCCAAAAAACTGCTTCCTTAAAATGCACATGTTGAGTCATGCGGATGAGAAATTGTTCAAATGCCACCTGTGTGATAAACGTTTTAACCAAAACCGGAGCCTCAAAGCGCACGTATTGATTCACAACGCCGAAAAACGCTTTAAATGTAATCAGTGCGACAAAGCTTTTCTAGACAACCACAACCTGAAAAAACATGTGTTGGTTCATACGGGcgagaaaccttttaaatgtgacCAATGCGATAAATCTTTTAGGATAAACGGCGAACTTAAAACACATATTTTAGGTCATACTGGcgagaaaccttttaaatgcaacCATTGTGATAAAGCCTTTAGAGAAAATAGCGTCCTTAAAACGCACTTGAAAATTCATGTGGACGGGAAAGCGTTTAAATGCCACCTGTGTGATAAAGGCTTTAATTACAGCCACGGTCTCAAATCTCACTTGTTGGTTCACCAAGTCGACAGACCCTTTAAATGCGACCAGTGTGATAAAGCCTTTAAAGAACAGCACGGTCTTAAAAAGCACACATTAGCTCATCGTGGTGAAAAACCGTTTAAATGTCACTTGTGTGATAAAGCCTTTACCGCTGGCAACACTCTCAAAACGCACATTTTAATTCATAAGGATGAAAAACCGTTTCAGTGCCACTTGTGCGGTAAACTTTTTACACATAACGGCAATCTTAAATCGCACATATTGGGTCATGAGGACGAGAAACCGTTTGAATGCAACGTGTGCGATAAAGCTTTTGCGCATAGCTTTAAGTTGAAAACGCACGTGTTGGTTCATAAAGGTGAAAAACCCTTTAGGTGCAATGTCTGCGATAGAGCTTTTACTCAAAAGGGCAGCCTTAGAGTGCACCTATTAACACACAAGGACGAGAAGCCCTTTAAATGCAACGTATGTGATCATTCATTTGTCCAAAACAGCAGTTTGAAAAAGCACTGGTTGGTTCATACGGGGGAAAAACCGTTTGAATGTCACCTGTGTGACAAAGCCTTCAATCATAAATCCAATCTCAATagacacatgttaattcattag
Protein Sequence
MENYCDSIKVEAEELVIKDEYDDAEEDNQNGSLPRSFLPICTDNLIVKTELKHNGEKPFKCDQCDRAFLENRNLKTHMIMHMDVKPFKCYLCDASFTRSGRLKSHILLHTGEKPFKCTQCDAAFAENGDLERHMIVHNPFKCDLCNTTYTRKGGLKLHMLRHTGEKPFKCNLCDKFFFNNARLKTHMLIHKNEKPFKCNQCDKSFRENIILKRHMVIHMDEKPFRCHLCDKGFNYKHTLEPHVLLHNSEKPFKCDQCDKAFLANGALKAHMVIHSGEKPFKCHSCNKSFKRSGSLKSHNLRHKDETPFKCDVCDKFFVSNGILKTHMLIHKGEKPFKCDQCDKAFLQSGSLKKHILVHKSARTLKALLLVQTGGKPFKCAQCDKAFPKNCFLKMHMLSHADEKLFKCHLCDKRFNQNRSLKAHVLIHNAEKRFKCNQCDKAFLDNHNLKKHVLVHTGEKPFKCDQCDKSFRINGELKTHILGHTGEKPFKCNHCDKAFRENSVLKTHLKIHVDGKAFKCHLCDKGFNYSHGLKSHLLVHQVDRPFKCDQCDKAFKEQHGLKKHTLAHRGEKPFKCHLCDKAFTAGNTLKTHILIHKDEKPFQCHLCGKLFTHNGNLKSHILGHEDEKPFECNVCDKAFAHSFKLKTHVLVHKGEKPFRCNVCDRAFTQKGSLRVHLLTHKDEKPFKCNVCDHSFVQNSSLKKHWLVHTGEKPFECHLCDKAFNHKSNLNRHMLIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-