Dcer021543.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dascillus cervinus
Gene Symbol
-
Assembly
GCA_949768715.1
Location
OX458320.1:25609699-25611929[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 6.2e-06 0.00041 21.7 3.9 1 23 56 78 56 78 0.98
2 24 2.1e-05 0.0014 20.1 2.1 1 23 84 106 84 106 0.98
3 24 3.6e-06 0.00024 22.5 2.4 1 23 112 134 112 134 0.99
4 24 0.091 6 8.6 5.4 1 23 140 162 140 162 0.99
5 24 1.2e-05 0.0008 20.8 1.1 1 23 167 189 167 189 0.98
6 24 0.00011 0.0073 17.8 5.9 1 23 195 217 195 217 0.99
7 24 4.2e-06 0.00028 22.3 1.3 1 23 223 245 223 245 0.99
8 24 0.00055 0.036 15.6 1.8 1 23 251 273 251 273 0.98
9 24 1.8e-06 0.00012 23.5 1.5 1 23 279 301 279 301 0.98
10 24 5.3e-06 0.00035 21.9 6.4 1 23 307 329 307 329 0.98
11 24 1.8e-06 0.00012 23.5 1.1 1 23 335 357 335 357 0.97
12 24 1e-05 0.00069 21.0 1.5 1 23 364 386 364 386 0.98
13 24 1.6e-06 0.00011 23.6 1.5 1 23 392 414 392 414 0.99
14 24 0.00014 0.009 17.5 2.7 1 23 420 442 420 442 0.98
15 24 6.7e-06 0.00044 21.6 2.6 1 23 448 470 448 470 0.98
16 24 1.2e-05 0.00077 20.9 3.3 1 23 476 498 476 498 0.98
17 24 0.0028 0.18 13.4 1.5 1 23 504 526 504 526 0.97
18 24 2.6e-06 0.00017 22.9 0.8 1 23 532 554 532 554 0.98
19 24 2.3e-06 0.00015 23.1 1.2 1 23 560 582 560 582 0.98
20 24 1.9e-05 0.0013 20.2 3.2 1 23 588 610 588 610 0.97
21 24 2.6e-05 0.0017 19.8 2.6 1 23 616 638 616 638 0.98
22 24 8e-06 0.00053 21.4 2.1 1 23 644 666 644 666 0.98
23 24 2.7e-05 0.0018 19.8 4.8 1 23 672 694 672 694 0.95
24 24 4.3e-05 0.0028 19.1 3.5 1 23 700 722 700 722 0.98

Sequence Information

Coding Sequence
ATGTATAACCCcgacaattttaatttccacgaaattaaattagaaccaGAGGAAGTTATCATCAAAGAGGAACCGCAAGAATTCATTGAAGAAGTCACATACGATCCACTTCATATCGGAGAGAGTATAGCAAATATCGAGgTTAAATCTGAGGAAGGGAAATCTTTCCAATGTCAACGATGTGATCACAGCTTCACTCAAAGGGGTTCGCTCAAACGGCACATGATGCTTCATCAGAACAAGAGGCCGTATGAATGCCAACGGTGCAACCAACGTTTCACCCAAAAAGGGCACCTCAACGTGCACTTGTTAATTCACGACCGAaagaaacctttcaaatgtGAGCAGTGTAACAAAGGTTTCTACCGAAACTCGGACCTCAACATGCACTTGAAAAAGCACGAGGACaagaaatgttttaaatgCGAGCATTGCGGCGAGTTATTCCACCTTCATTCGAAATTCGCAATCCATCTGTTAACGCATGGAGAGAAACCGTTTCAGTGTGAGCTGTGCGATCGGAAGTTTACAAGGAGTCAGTCTCTCAGCATGCACTTGATGATACACCGGAACGAAAGGCCGTTCAAGTGCCAGCTGTGCTCGCGAAGTTTTCGGCTCAAGCAGCacctcaaacagcacatgtcgACACATGACCGGGTGAAGGCTTTTCAGTGCGAACAGTGCGATAAGGGGTACTTTCGAAAAACCGACCTCAAAGTGCACATGTTGACTCATGACAATGAGACAGCTTTCAAGTGCCAACGGTGCGAGAAGGGTTTCCTGACCAATTCAAAACTCAaacaacacatgttgattcatgagagTGCAAccccttttaaatgtcaacaatgtGACCAAAGCTTTACCCAAAGTTCAGATCTTAAAGAGCACAGATTGATACATGGTGACacgaaaccttttaaatgtgaacTTTGTGGTCAATGTTTTACCCGAAAAGATTgtctcaaaagacacatgttgttGCATGAGGGTAACAGGACCttcaaatgtcaacagtgtggTCTCACTTTTACCCAAAGTTCAAACCTGAAAGAGCACAGGGTAATACATGGGGATTTTGACAAACCTTTTAAGTGTGAACTGTGTGAGGCTAGCTTTGCTCGAAAAGGTTGCCTCAAAAGGCACATGTTGGTTCATGAGGGAACGAGGTCCTacaaatgtgaacagtgtgaCCAAACCTTTACCCAAAGTTCAAGGCTCAAAACGCACATAATGATCCATGAGGGTAAGAGACCTTTCGAATGCCAGTTGTGCGAGCGTCGTTTTACTGAGAAGTGCGGCCTCAAACGACACATGTTGGTCCATGAGGGCGTGCGAGCCTTCAAGTGCCAACAGTGCGAGCAAACTTTCACCCAAAATGCACATCTCAAGCAACACATATTGATCCATGAGGGGAAAAAGCCGCACAAGTGCCAACTGTGCGAACGGAGTTTTACCCAAACTTCCggtctcaaacagcacatgttgaCCCACGACGGCGTGAAACTGTTTAAGTGCCCTTTCTGTGACAAAAGTTTTCTTTTGAATCGAACTCTCAAATCGCACTTATTGCTCCATGAGGACAAGAAGTCGTTCAAGTGTCAACATTGCGACAGAGCTTTTAACCAACAATCGGGACTCGCGGCGCACTTGGTCACCCATAGAGGAGACAGACCTTTCAAGTGCCAGATATGTGACAAGACTTTTCCTCGGAGTGCGCAACTCCATCAGCACGTGTTGGTGCATGGAAGCAGGAAGCTTTTCAAGTGCCACCTGTGCGACAAGGCTTTCAATCGAAAGGCTACTCTCAATCTGCACTTGTTTTCTCATGAGGACACGAAGCCTTTTCAGTGTCAACTGTGTGAGCACAGTTTTTTTCAAAGTAGCGGGCTCAGACGGCACATGTTGATCCATGAAGGTGTCAGAGCtttcaaatgccaacagtgtgacCTCAGTTTCACCCAAAATGGacatctcaaacagcacgTTTTGATTCATGAGGGCAATAAATCTTACCTGTGCCAACATTGTGGCGtgtgttttacccaaaattcTAGTCTCAAGAAGCACCTGACGATTCACGAGGATAAGAAGCTTTTCAAGTGCAAACAGTGCAACAAACAGTTTACCCTAAGTGCTGATCTTAAAAGGCACAAGTCGACTCATAAATGA
Protein Sequence
MYNPDNFNFHEIKLEPEEVIIKEEPQEFIEEVTYDPLHIGESIANIEVKSEEGKSFQCQRCDHSFTQRGSLKRHMMLHQNKRPYECQRCNQRFTQKGHLNVHLLIHDRKKPFKCEQCNKGFYRNSDLNMHLKKHEDKKCFKCEHCGELFHLHSKFAIHLLTHGEKPFQCELCDRKFTRSQSLSMHLMIHRNERPFKCQLCSRSFRLKQHLKQHMSTHDRVKAFQCEQCDKGYFRKTDLKVHMLTHDNETAFKCQRCEKGFLTNSKLKQHMLIHESATPFKCQQCDQSFTQSSDLKEHRLIHGDTKPFKCELCGQCFTRKDCLKRHMLLHEGNRTFKCQQCGLTFTQSSNLKEHRVIHGDFDKPFKCELCEASFARKGCLKRHMLVHEGTRSYKCEQCDQTFTQSSRLKTHIMIHEGKRPFECQLCERRFTEKCGLKRHMLVHEGVRAFKCQQCEQTFTQNAHLKQHILIHEGKKPHKCQLCERSFTQTSGLKQHMLTHDGVKLFKCPFCDKSFLLNRTLKSHLLLHEDKKSFKCQHCDRAFNQQSGLAAHLVTHRGDRPFKCQICDKTFPRSAQLHQHVLVHGSRKLFKCHLCDKAFNRKATLNLHLFSHEDTKPFQCQLCEHSFFQSSGLRRHMLIHEGVRAFKCQQCDLSFTQNGHLKQHVLIHEGNKSYLCQHCGVCFTQNSSLKKHLTIHEDKKLFKCKQCNKQFTLSADLKRHKSTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-