Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.4 3.1e+04 -3.8 1.0 18 22 89 93 83 95 0.75

2 9 0.00028 1.6 9.9 1.7 18 39 111 129 102 136 0.89

3 9 0.0003 1.7 9.8 1.8 17 38 138 161 130 161 0.88

4 9 0.011 60 4.9 2.0 14 39 164 186 160 190 0.83

5 9 0.00092 5.2 8.3 2.8 17 39 195 214 187 218 0.82

6 9 0.00099 5.6 8.2 0.8 17 40 223 243 215 246 0.84

7 9 0.0011 6.3 8.0 0.2 13 39 247 270 244 276 0.84

8 9 0.0012 6.6 8.0 0.9 17 39 279 298 272 302 0.86

9 9 0.0016 9.3 7.5 1.8 5 39 296 326 292 329 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.4	3.1e+04	-3.8	1.0	18	22	89	93	83	95	0.75
2	9	0.00028	1.6	9.9	1.7	18	39	111	129	102	136	0.89
3	9	0.0003	1.7	9.8	1.8	17	38	138	161	130	161	0.88
4	9	0.011	60	4.9	2.0	14	39	164	186	160	190	0.83
5	9	0.00092	5.2	8.3	2.8	17	39	195	214	187	218	0.82
6	9	0.00099	5.6	8.2	0.8	17	40	223	243	215	246	0.84
7	9	0.0011	6.3	8.0	0.2	13	39	247	270	244	276	0.84
8	9	0.0012	6.6	8.0	0.9	17	39	279	298	272	302	0.86
9	9	0.0016	9.3	7.5	1.8	5	39	296	326	292	329	0.76

Coding Sequence: ATGGAGAACtgcgatttaattaaattcaaaattaaggAGGAAGAACTTGTAATAAAAGATGAATACGTGGAAGAAAACAGTTTCGAATGCAACACAGCTTTTTATAAAACAGAGATCAAAAAAGAAGATGGAAATGAAGATACCACCTACCAACATTGTTCTTCTTCAGCCTTGACTCAAAACGGATTTGAATTCAAGAATTGCGGACAAAACTTGGACCCAGGTATGTCACCCATGCATCAACTAATAAAAACCGAGTGTACGGAATGTGGAATCTGTTTCGCTGACAATGACCAACTTGAAACGCACCACAACATACAGGAGCCTTATAAATGCAACAATTGTGGCAAAATTTTTCACCAAAGCAGCAATTTCAAAGCCCACCTGTTAATTCACAAAGGcaagaaacctttcaaatgcAACGTGTGCAATAAAGCTTTCACGCAAAAAGGCAACCTCAATACGCACACGTTGGTGCTGCACAAGGGCGAGAAACGTTTTAAATGCCACTTGTGCGATAAAGCCTTTACTCAAAACAGCACTCTCAAAACGCACATATTGGTTCACAAGGGCGAGAAACCCTTCAAATGCCACCTGTGTGAAAAAACTTTTACCTATAAAAACACCCTCAAAACGCACATGTTGTTCCATCGAGGCGAGAAACCCTTCAAGTGCCGCCTGTGCGATAAAGAGTTCACTCAGAACAAGATTCTCAAACGGCACTTGGTGGTTCACAAAGACGAGAAACCCTTCAAGTGCAACCAATGTGATAAAGCTTTTACCCAAAGCAGCAGCCTCAAAGCGCACATGTTGGTTCACAGGGGCGAGAAACCCTTCAAGTGCGACCTCTGCAACAAAGCTTTCACGCAGCACTCGACGCTTAAACGGCATGTTTTAGTTCATGAGGGCAAGAAACCCTTCAGTTGCCAGTTGTGTGATAAAAGTTTTAGTCGCAACAGCAATCTTAAAGCGCACGTATGTACGTTTAGAGACTCACAACTAAATACAGTAGATGCAATTAAAcaagaaatataa
Protein Sequence: MENCDLIKFKIKEEELVIKDEYVEENSFECNTAFYKTEIKKEDGNEDTTYQHCSSSALTQNGFEFKNCGQNLDPGMSPMHQLIKTECTECGICFADNDQLETHHNIQEPYKCNNCGKIFHQSSNFKAHLLIHKGKKPFKCNVCNKAFTQKGNLNTHTLVLHKGEKRFKCHLCDKAFTQNSTLKTHILVHKGEKPFKCHLCEKTFTYKNTLKTHMLFHRGEKPFKCRLCDKEFTQNKILKRHLVVHKDEKPFKCNQCDKAFTQSSSLKAHMLVHRGEKPFKCDLCNKAFTQHSTLKRHVLVHEGKKPFSCQLCDKSFSRNSNLKAHVCTFRDSQLNTVDAIKQEI

Sequence clustering based on sequence similarity using MMseqs2