Dcer033517.1
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- -
- Assembly
- GCA_949768715.1
- Location
- OX458323.1:30103538-30104281[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-11 5.5e-09 36.7 0.1 1 37 15 51 15 57 0.94 2 2 8.9 1.6e+03 0.0 0.1 12 23 128 140 125 142 0.74
Sequence Information
- Coding Sequence
- atGGGCAAGATATACAGAAGAACAATAACAAGAGCTTCATGGACCGAAGCTGAAATGGCCGCTGCTATAGATAAAGTGAAAAGTGGAGAAATGGGCGTTAATGCAGCGAGCAGCGCATATGGCGTACCTTCTAAAACTCTAAGACGGCACATAGCTGTTAATAGCTGTAAAAAACATCTTGGTCGTTGTCCAACCTTAGGTAGAGAACATGAAAATAGGATAGTTGCACACATACAAGCCCTTGGAAAAGTAGGATTTTCACCAAATAGAACCGATGTTAAAACCATGGCCTTTCAATTTGCAAATAAACTAGGCATCACACATAGTTTTtcgcaaaagaaaaaaattgcaggCTTCATGAGGAGAAATAAAGTCCTATCTATTAGAAAATCTGAAGGGTTATCATTAGCAAGAGCACAGGGTATGAATAGGAAAGAAGTCGGGGATTACTTTGGTTTGCTGCTTCAGGTGTTAacagaaaatgatttattaaacaaacCGTCTAGAATCTTTAACATGGATGAAACTGGCATCCAAGTGAACAACACAGCAGAATACGTCATTGCAACAAAAGGATCTAAAGATGTCTATTCCTTAACAAGTTCGGAAAGGggtgaaaatatttcattaataGTTTGCTGCAATGGTGAAGGCAACTTCTTCCCACCAGTGTTGATAATGAAAGGCAAATATAAAAAGCCAGAATTTACAGATAGCTCCCTCCCGGTTCCGACGTTTATATGA
- Protein Sequence
- MGKIYRRTITRASWTEAEMAAAIDKVKSGEMGVNAASSAYGVPSKTLRRHIAVNSCKKHLGRCPTLGREHENRIVAHIQALGKVGFSPNRTDVKTMAFQFANKLGITHSFSQKKKIAGFMRRNKVLSIRKSEGLSLARAQGMNRKEVGDYFGLLLQVLTENDLLNKPSRIFNMDETGIQVNNTAEYVIATKGSKDVYSLTSSERGENISLIVCCNGEGNFFPPVLIMKGKYKKPEFTDSSLPVPTFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -