Basic Information

Insect: Danaus plexippus
Gene Symbol: salm
Assembly: GCA_018135715.1
Location: CM030908.1:4508763-4525991[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.21 15 6.6 2.8 1 21 150 170 150 171 0.93

2 8 4.5e-06 0.00031 21.3 0.9 1 23 471 493 471 493 0.98

3 8 8.9e-06 0.00062 20.4 2.1 1 23 499 521 499 521 0.98

4 8 0.0025 0.17 12.7 2.0 2 23 777 798 776 798 0.97

5 8 0.027 1.9 9.4 1.6 1 14 804 817 804 818 0.94

6 8 0.71 49 4.9 0.0 10 23 844 857 842 857 0.93

7 8 4e-06 0.00028 21.4 1.7 3 23 943 963 941 963 0.96

8 8 4.8e-07 3.3e-05 24.4 0.5 1 23 969 991 969 991 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.21	15	6.6	2.8	1	21	150	170	150	171	0.93
2	8	4.5e-06	0.00031	21.3	0.9	1	23	471	493	471	493	0.98
3	8	8.9e-06	0.00062	20.4	2.1	1	23	499	521	499	521	0.98
4	8	0.0025	0.17	12.7	2.0	2	23	777	798	776	798	0.97
5	8	0.027	1.9	9.4	1.6	1	14	804	817	804	818	0.94
6	8	0.71	49	4.9	0.0	10	23	844	857	842	857	0.93
7	8	4e-06	0.00028	21.4	1.7	3	23	943	963	941	963	0.96
8	8	4.8e-07	3.3e-05	24.4	0.5	1	23	969	991	969	991	0.98

Sequence Information

Coding Sequence: ATGAGCCGGGCGCGGCTCCGCCTCCTTGTCATAACCTTATACCTGGTGCGCGCGCGCGACTCCCGCCGTCCTCCACCACCCGCCACCACCGCCCGGAGGCTCGCGGCTCGCGCTCAGTCCCGCGTCAGATGGCGAGAGGTGAGCCCGTCTGTATACCGCGTCCGATCACACAGGCTCCGCGCGAGTGAGTACTCTACCACCGCCGGCGATGCGAGGGCTGTGAGCCGCCAGCGCTACCACCGACCACCTACCATCGACCGACCACCGGCCAGCATGCCGCGCGTCAAGCCAGCCTGCGTCCGACGCGTCTCCATCGGTACATATCCATCAGCTCGATCACCAAACCGACACACGACCGTACATAGGATCTGTGATAGCTCGGGATCCTGTTCAGAAGAGGATATAAATAATGTGTTACCCGATGACGGAAGAGATCGGCCTGAGGCACATATGTGCCCTCGCTGTCATGAACAGTTCGAGAACCTACACGACTTCTTGTATCACAAGAGGGTTTGTGATGAAAAAGCAATACAAATGGGTGAAGAAAGAATGCACTCTGATCCCGAGGATATGGTAGTGTCGGGGGATGAAGAAATGGATGGACCCAATAAGCGGTTAGATCAAGTAAGAAGGCATCGGCAGGATGCTGAAAATAATAACAGCCTAGAGGATGGTGAAGCTGAGGTACCTGAAGCCGATATGCCCCCCGTAGGTCTTCCCTTCCCCGTAGCAGGCCATGTTACTCTTGAAGCTCTTCAGAATACAAAAGTAGCTGTTGCTCAATTCGCTGCGACGGCAATGGCTAATAATGCAAATAATGAAGCCGCTTTACATGAGCTTGCCGTATTACAAAGTACGCTATTTACTCTACAGCATCAACAAGTATTTCAACTTCAGTTAATACGCCAACTACAAAATCAATTGTCATTAACACGACGGAAAGAGGATCAACATTCAAGCCCGCCTCCGAGTGAAATTGAACAAAACGCTCCGTCGACGCCAGCTCGCTCGCCTTCACCACCGCGTCCGCCACGGGAGCCATCTCCTGCTGAACCCACTCATCCTACTAGCCAAAATTTGCCGTCTACCCACACAAATCTTACGCCCAAAACGGAACCTATCTCTGTTCCCAAGCTTCCGACTTCATCGCCACCAATGATGTCCCACCCACCTTACAGCTCCATATCTTCCTCTCTAGCATCTTCAATCATTACAAACAACGATCCTCCGCCATCTCTTAATGAACCAAACACTCTCGAAATGCTTCAAAAACGTGCACAAGAAGTACTAGATAACGCATCACAAGGCCTTCTCGCTAATAATCTTGCCGATGAACTAGCTTTTAGAAAATCTGGAAAAATGTCACCCTATGACGGAAAATCTGGTGGACGCAACGAACCATTCTTTAAACATCGCTGTCGATATTGTGGAAAAGTTTTTGGAAGTGACTCAGCGCTTCAGATTCATATAAGATCTCATACAGGCGAAAGACCATTTAAATGTAACGTTTGTGGATCTCGCTTTACAACGAAAGGAAACCTTAAAGTACATTTCCAAAGACATACTTCTAAATTTCCACATGTTAAGATGAATCCCAACCCTGTACCCGAACATTTAGACAAGTATCATCCACCACTACTAGCACAACTATCACCGGGGCCGATACCGGGAATGCCACCCCATCCACTTCAATTTAATCCAGGTGCACCAGCACCTTTTCCACCAAGCTTGCCATTATATAGGCCACCACACCATGATTTACTTCCACCTCGACCTCTTGGAGATAAACCTCTTTCACATCATCCACTTTTCGCGATGCGAGAAGAACAAGACGTACCAGCAGATCTCAGCAAACCATCTGCACCAAGTCCTACTCAGCCTGCATCTGAGGTTTTTAAATCCGAACCACAAGATGAAGAAAGCCAACGTGACTCTAGCTTTGACGAGTCTGATCGCATATCACCTAAAAGAGAACCTGAAGAAAACGATGCTGGACAAGATCAAGAACACGATCGATATCCATCAACATCGCCCTATGATGACTGCAGCATGGATTCAAAATACAGCAACGAAGACCAAATCGGCAGAGAAAGTCCACAAGTGAAGGCTGATCCAGACCAACCGGAAAATCTTTCAAGTTCGGAGAGCGGGCGCAGTGCACGGGCCTCCCCACCGTCGCCGTCTCCGTCGGTGCTGTCGACGCCCCCGCGGCTGCCGCAGCACTCGCCGCTGCCTTCGCCGCCGACCCCGCTCGCCGCGCTCGGTGCTCTCGGTGGACCTTTCAGCCCGCTCGGACTCGCTTTCCCTCCCGCAGTGCGCGGAAATACAACATGTACTATCTGCTACAAGACTTTCGCCTGCAATTCGGCGTTGGAAATCCATTACCGCAGTCACACTAAAGAGCGACCATTCAAATGCACCGTCTGCGACAGAGGCTTCTCTACTAAGAGCAGTGGCGGCGGTTGCCGGTGTAGGCGCCCACGCGCACCCCGCCCGCCGCACGCCACTGCTTTGGACCTCTGGAACGCCTTCGTCTACCCGGGAAACATGAAACAGCACATGTTGACGCACAAGATACGTGACATGCCGCCTGGTTTCGAAAAGAGCGTAAGTGGACCAACTGGTCCGCCAAGTGAAGAAGGCCGGGAACCAAGTCCAGACAGACGATCGTCTCCTGAGAAGATCGATTTGAAACGATCACCCCCCGCCTTACCCCCCGTCACTATAGCGCACCCACCCCCCATTGATATGCCACCACTGCCTAAAAGACCTACAGTACCTATAGTACCAAATCATCCGCCACCATCTCAGTCATCGAAGCACCTTTGCGGAGTTTGTCGCAAAAACTTCTCATCGTCATCGGCTTTACAAATCCACATGCGCACGCACACCGGAGACAAACCCTTCCGATGCGCTGTTTGCCAAAAAGCTTTTACCACCAAAGGAAACCTTAAGGTTCACATGGGCACACACATGTGGAGCGGAGGTGCGTCTCGTCGCGGCCGTCGTATGTCCCTGGAACTGCCCCCACGGCCGCTACATGAGCCTCACGACCTTCTCCGGCGACCTGATCTCTTCTACCCCTACTTGCCTGCGCCATTTCTCAATGGCATGCAACAAAAACTGAACGAGATATCAGTAATACAGCAACAAAATGCCGGCCAGAATGGCGTAGCTGGTAAATTCCCGGGACTACTTGGTTTCGGAGCTTTTGGAGCTGGAAGACCGGGTGCCGCCTCCCCTCTCGAGAGGCCACCGTCACTCGACGGCGATGAACGTCAGGCGGCGATGAGGGAACTCGCTGAGAGAGGCAGGGAGCTCGCTGAACGGAGCCGACAGATGCGTGAGGAAAATGAACGGGAGCACTACCGGTCCGCTGGCGGTCATCCAGCGCATGCGCCACCGACAGCACAGGCTTCGCCTCCAGCACCACATAATCTACCGCATCCCCTGGCATCAATACCGCCGCCCGCGCGCACCGAAGGTCTCACAGTTTAA
Protein Sequence: MSRARLRLLVITLYLVRARDSRRPPPPATTARRLAARAQSRVRWREVSPSVYRVRSHRLRASEYSTTAGDARAVSRQRYHRPPTIDRPPASMPRVKPACVRRVSIGTYPSARSPNRHTTVHRICDSSGSCSEEDINNVLPDDGRDRPEAHMCPRCHEQFENLHDFLYHKRVCDEKAIQMGEERMHSDPEDMVVSGDEEMDGPNKRLDQVRRHRQDAENNNSLEDGEAEVPEADMPPVGLPFPVAGHVTLEALQNTKVAVAQFAATAMANNANNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKEDQHSSPPPSEIEQNAPSTPARSPSPPRPPREPSPAEPTHPTSQNLPSTHTNLTPKTEPISVPKLPTSSPPMMSHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTSKFPHVKMNPNPVPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFNPGAPAPFPPSLPLYRPPHHDLLPPRPLGDKPLSHHPLFAMREEQDVPADLSKPSAPSPTQPASEVFKSEPQDEESQRDSSFDESDRISPKREPEENDAGQDQEHDRYPSTSPYDDCSMDSKYSNEDQIGRESPQVKADPDQPENLSSSESGRSARASPPSPSPSVLSTPPRLPQHSPLPSPPTPLAALGALGGPFSPLGLAFPPAVRGNTTCTICYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCRCRRPRAPRPPHATALDLWNAFVYPGNMKQHMLTHKIRDMPPGFEKSVSGPTGPPSEEGREPSPDRRSSPEKIDLKRSPPALPPVTIAHPPPIDMPPLPKRPTVPIVPNHPPPSQSSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHDLLRRPDLFYPYLPAPFLNGMQQKLNEISVIQQQNAGQNGVAGKFPGLLGFGAFGAGRPGAASPLERPPSLDGDERQAAMRELAERGRELAERSRQMREENEREHYRSAGGHPAHAPPTAQASPPAPHNLPHPLASIPPPARTEGLTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01157108;
90% Identity: iTF_00782905;
80% Identity: -