Dple009287.1
Basic Information
- Insect
- Danaus plexippus
- Gene Symbol
- -
- Assembly
- GCA_018135715.1
- Location
- CM030929.1:2536505-2541670[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.01 0.69 10.8 3.0 1 20 227 246 227 249 0.97 2 10 7.5e-05 0.0052 17.5 0.8 1 23 309 332 309 332 0.96 3 10 0.0016 0.11 13.2 0.3 2 23 337 359 337 359 0.96 4 10 0.0091 0.64 10.9 1.3 2 21 390 409 389 410 0.94 5 10 0.00038 0.026 15.2 0.1 3 23 425 445 424 445 0.96 6 10 5.2e-05 0.0036 18.0 0.7 2 23 452 474 451 474 0.96 7 10 6e-05 0.0042 17.8 3.3 1 23 494 516 494 516 0.97 8 10 1.2e-05 0.00081 20.0 1.1 1 23 522 544 522 544 0.99 9 10 2.6e-05 0.0018 18.9 1.8 1 23 550 572 550 572 0.94 10 10 7.8e-06 0.00055 20.5 1.1 3 23 580 601 578 601 0.96
Sequence Information
- Coding Sequence
- ATGAGTGATTTGTTGGCGTGCCGTGTGTGCCTGGCGTCTGAAGACGTGAAGCTTTACAGTCTCAATAAGTACAATTTGATGCAATCCTACGAGATGCTAACCGGAATACAGCTGTGCCCGGAGGACGGTTTGCCGCAACACATCTGTAGTTTCTGCAGTTCGTTGTTGAACAAAGCCGTATCTTTTAAAGAGAAATGTCTCAGCTCTCAGGAAATATTGAAATTCACGGAACAGAAACAAAGACTGACTTTAGATAATATAAAACACATCCACCTAGCACACCATCACCCGTACAGGAGAGACGAGGAACATAGGCGATTCAACGTAGACTACACGACGGTCAAAAAAGAGACCACCATTAAAGAAGAATTACCAGAGAAGAGGAAGAAGAGAAGAAAAAAGGAGAGTATAGAAGTTAAACTTGAAGATGAACCCCAAGACGATGGTTACGGCAATTACGAGAGCGATCAAGATATACCGGTCCTGGACTTGGATATACGTGGATTGGAGCTGCCAGATGGTCAGGAGATAGCGGGAGATAGTCAAGAGATAGCAGGGGATAGTCACGAGATAGCTGATAAAGATCTCAAGGATGTGGAGATAGTGCTGCTGAGTAAGGCGGAGCAGATACAGGAGATTGAAAAGAGGAAGACATCTTCCAACTACGTGAACTCCTACTACAAGTGTGAAAAATGCTTCAAGGGGTTTATCACTGAGCCTACCTACAGAAATCATATGGTCTGCCACGATCCTGAGCGCGGTCCACACACGTGCGACGTTTGCAACTCCCACTGGCCGTGCGCGCGCGCCCTTAGAGCACACTCGCTGAACACACACGAGAGGAAATACATGTGCAGGACACAATCCAAACTGCTTTCCAGCCATCGAGCCAAGGAGCACAGCAAGTGGCACAGCGGGTTCTCCTTCATATGCAAGACGTGCGGCGCCTCGTTCGCCAAATCCACGAGTTATCTGACACACATGCGACTCCAGCATCCGTCGAGCAACTCGTGCGAGATCTGCGGAGAGTCGTTCGTGGGGGAGTTCGGGCTGAGGATGCACAAGAAGAAGTCACACGTCGGTACCACACGGATGCAAGCGGTCAGTATACCCACTAACCAGCTGGTAACATCTGCTCAACACCAGTTCCAGTATCCGGCTGTGAGTCAGTGCGATCGCTGCCATCACAAGTTCGACTCCCGGGAGGCGCTGCTGCGACACGTCCAGCTGTCCGGGGACGCGTGCGACGCGGGCGAGGACACGCCACGGCCGTGTCCTCACTGTGGGGAGGGTTTCGACTCTGACGACAGTCTAAGGGACCACGTGGCGTCCCATGAGAAGGACACCGGCGTCACGTGTGAAGAGTGCAAACTAACGTTTTCGTCATCTAGTTCCTACACGATCCACTACCAGAGAGTACACCTCGGACTTAAGATGAAACAGAACAAGCCGCGCTGTTACAAGAAACCGGCCGACAGTCACGTCTGCGAGATGTGCGGGAAGAAGTGTATTACGAAGGCAACCCTGATGTATCACCAGCGGATCCACACCGGTGAGAGACCGTTCCAGTGTAGCGACTGCCCCAAGAAGTTCAGTGTGTACCAGAGACTCCAGATTCATCAACGTATACACACGGGGGAGAGTCCTTACCAATGTAAGAGTTGTCCAAAGGCTTTCAAACACAAGGCAGCTCTCAACAGACATGATCGGGTCCATACGGGGGCAAAGCCCTACGGCTGTCCTCACTGCGGCAAGTCGTTTTCACAGTCAAATTCTATGAAACTTCACGTAAGCACCGTGCACCTTCGACTACCAGCGCCCTACAGGAACAGGACGAATAAAATATAA
- Protein Sequence
- MSDLLACRVCLASEDVKLYSLNKYNLMQSYEMLTGIQLCPEDGLPQHICSFCSSLLNKAVSFKEKCLSSQEILKFTEQKQRLTLDNIKHIHLAHHHPYRRDEEHRRFNVDYTTVKKETTIKEELPEKRKKRRKKESIEVKLEDEPQDDGYGNYESDQDIPVLDLDIRGLELPDGQEIAGDSQEIAGDSHEIADKDLKDVEIVLLSKAEQIQEIEKRKTSSNYVNSYYKCEKCFKGFITEPTYRNHMVCHDPERGPHTCDVCNSHWPCARALRAHSLNTHERKYMCRTQSKLLSSHRAKEHSKWHSGFSFICKTCGASFAKSTSYLTHMRLQHPSSNSCEICGESFVGEFGLRMHKKKSHVGTTRMQAVSIPTNQLVTSAQHQFQYPAVSQCDRCHHKFDSREALLRHVQLSGDACDAGEDTPRPCPHCGEGFDSDDSLRDHVASHEKDTGVTCEECKLTFSSSSSYTIHYQRVHLGLKMKQNKPRCYKKPADSHVCEMCGKKCITKATLMYHQRIHTGERPFQCSDCPKKFSVYQRLQIHQRIHTGESPYQCKSCPKAFKHKAALNRHDRVHTGAKPYGCPHCGKSFSQSNSMKLHVSTVHLRLPAPYRNRTNKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00419191;
- 90% Identity
- -
- 80% Identity
- -