Dple005630.1
Basic Information
- Insect
- Danaus plexippus
- Gene Symbol
- -
- Assembly
- GCA_018135715.1
- Location
- CM030920.1:6779076-6785287[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0051 0.35 11.7 3.1 1 23 280 302 280 302 0.98 2 12 0.048 3.3 8.6 0.6 2 23 310 331 309 331 0.90 3 12 0.22 15 6.5 1.9 1 23 335 357 335 357 0.97 4 12 0.00024 0.017 15.9 2.8 1 23 362 385 362 385 0.98 5 12 0.019 1.3 9.9 0.4 1 23 389 412 389 412 0.93 6 12 0.0068 0.47 11.3 0.2 3 21 476 494 475 499 0.91 7 12 0.00045 0.031 15.0 1.5 3 23 509 530 509 530 0.97 8 12 0.23 16 6.5 0.6 2 23 550 572 550 572 0.96 9 12 1e-06 7.3e-05 23.3 1.3 1 23 583 605 583 605 0.98 10 12 1.9e-06 0.00013 22.5 4.0 1 23 611 633 611 633 0.99 11 12 0.0011 0.078 13.8 1.9 1 23 639 661 639 661 0.98 12 12 2.1e-05 0.0015 19.2 0.2 1 23 667 690 667 690 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAACTTAAAGTGTGCAGAATATGCCTTGTGATGGATGTTAAAATGCACGATCTTTGTTCGCACCCCCTTGATGTTTATTATGAAAATGTTATTGGTGGCAACGTATTGAAGATGGTACAACTAAGGGGATATGCATGTTATATGTGTGCACCGATGCTGAGAAAATTTCATTTCTTCAGAGAGAAATGTCTAAAAGGACAAACAGAACTCTATGGTTTACTGAACTCCTTTGGAAAGATTTCCAGAGACGGCATTATACATTTACATAAACAAAATCAAAGTTCTGCCTATTTAGAAAATATAAAATTATACAACATAGTCATCGACACTAACGAAGAGGATGGCGGAATGAAAATAGAACCAACGGAAATATATCAAAGTAGAATATATAATGTGGAGAGGGGTATGAGGGAAAATGACAATGAGAGGTTTAAGCAAGAAGTGACACATCAAGAGAGGATCTCGTTTAATATTATCGAAGATATTAAGCAAGAAGAAGAATTTTATGACTATAACGGAATATCAAGTGACGATGACGAACCATTGTCCGTTCATAAAGAAAAGAAAGAAGACGGAAAGAACAGAATTAGAAGTAAAACAGATGATAAAATAGAAATAGAAGCGGATGCTGAAAAGAAGAGGGGAAGGCCTAAGAAGGGGGAGGTTAGGAAGAAGATCATTAAGAGAAGTAAACATAGTCAACACATAGCGCTGTTGGACAACGATGGGCTCGATGTAGAAGACTATTGCAATATAATAACACTCACCGAGGAGGAACAGAGGGAGGAGGTGATCCAGCGCCAGCAGTCTCTCAACTATATGAACTCTGTGTACAAATGTAATCTGTGCTACAAAGGATTCGTCGACACTCACGCCTGGAAACACCACGTCGCTAAACACGAACCGAGCGCCGGCGATCTGGAGTGTAGCATATGCAAGATGAGATTCAAAACTTTGAGGATTTTGAAGAAACACGCCGGGAACCACGGCAAGAGGTTCTCGTGTAAATCGTGTTCCTACGTGTCGAAAAACACAACTCAAGCAAAACAGCATCAACAGTGGCACAAGGGCGTGACATACAAGTGCCAGCACTGTGAAGAAATTTTCTCTAAGTGGACGTCGTATCTGAGCCACGTCCGCATGAAGCATCCCTCTGAACACATCTGCGGAGCGTGCGGGTATTCCTTCGTGTCGCGGCTGGGACTTAACATGCACAGGACTATGATGCACAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATTTCACTTCAAAACAGTATAACCGTGGAGCAGGATGGTGTTGGCGAGGATAGCAAAGACTCGCCGTACTGCGGACAGTGTGACGTGAAGTTCATTACCCTGGAGGCGTACAAGAGGCATATGGTGACGTCGGTCAAACACACGCAGAGCACCGACTTCGGTAACGGCTGTCGTGAATGCGGCGAGACGTTCCCTGACGCGGAGGCGCTCCGAGTACACCACAGACACAAGCACGCGCGGCGGCGGCCCAGGAACTACGGCAAGAGACCCGCCGACCACACCTGGCCCGCCACCTGCGAACATTGTGCGGAGGTGATCCGCAGCGCCCGCGAGTACTGGTCACACTTCAGGCGAGTGCATCCCGACAAAACGTATCCCACGCAGAAGGACTTTGTCTGTGACGTGTGCGGGAAGAGCTTCCGGAGCAACGCCTTCCTGAACTATCACAAGCGGACTCACTCGTCGGAGCGCTCGTACAAGTGCAGCCAATGTCCGAAGGCGTTCCACAACAGGAACAATCTGCAGATGCACCAACGCACACACTCCGACGAGCGACCCTACCCTTGCGCGTTGTGCGACAAAGCCTTCAAATGCAAGAGCGCTCTGGACAGGCACTTCCGGAGTCACAGCGGTGAGAAGCCGTACGTGTGCCAGGTGTGCGGGAAGGCGTTCGCTCAGTCCAACAGTCGCAAGCTGCACGTGAGGACGGTCCACCTGAAGCAGTCGGCGCCGTACGTGTCGCGGGCGAGGCTCGAGAGGAGGACCCGGGCGACCAAGGAGCACGCACCGGCCTCGCACTTTCTCTACTGA
- Protein Sequence
- MEELKVCRICLVMDVKMHDLCSHPLDVYYENVIGGNVLKMVQLRGYACYMCAPMLRKFHFFREKCLKGQTELYGLLNSFGKISRDGIIHLHKQNQSSAYLENIKLYNIVIDTNEEDGGMKIEPTEIYQSRIYNVERGMRENDNERFKQEVTHQERISFNIIEDIKQEEEFYDYNGISSDDDEPLSVHKEKKEDGKNRIRSKTDDKIEIEADAEKKRGRPKKGEVRKKIIKRSKHSQHIALLDNDGLDVEDYCNIITLTEEEQREEVIQRQQSLNYMNSVYKCNLCYKGFVDTHAWKHHVAKHEPSAGDLECSICKMRFKTLRILKKHAGNHGKRFSCKSCSYVSKNTTQAKQHQQWHKGVTYKCQHCEEIFSKWTSYLSHVRMKHPSEHICGACGYSFVSRLGLNMHRTMMHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFISLQNSITVEQDGVGEDSKDSPYCGQCDVKFITLEAYKRHMVTSVKHTQSTDFGNGCRECGETFPDAEALRVHHRHKHARRRPRNYGKRPADHTWPATCEHCAEVIRSAREYWSHFRRVHPDKTYPTQKDFVCDVCGKSFRSNAFLNYHKRTHSSERSYKCSQCPKAFHNRNNLQMHQRTHSDERPYPCALCDKAFKCKSALDRHFRSHSGEKPYVCQVCGKAFAQSNSRKLHVRTVHLKQSAPYVSRARLERRTRATKEHAPASHFLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -