Dple004030.1
Basic Information
- Insect
- Danaus plexippus
- Gene Symbol
- -
- Assembly
- GCA_018135715.1
- Location
- JAEQBL010000033.1:642908-645376[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00045 0.032 15.0 0.8 1 23 5 27 5 27 0.98 2 17 0.0025 0.18 12.6 0.2 2 23 57 79 56 79 0.96 3 17 0.46 32 5.6 5.7 1 21 102 122 102 124 0.95 4 17 0.017 1.2 10.0 0.5 2 23 129 150 128 150 0.96 5 17 4e-05 0.0028 18.3 1.4 1 23 155 178 155 178 0.96 6 17 0.036 2.5 9.0 1.4 2 23 188 210 187 210 0.94 7 17 0.0018 0.13 13.1 9.3 1 23 216 238 216 239 0.95 8 17 6.6e-05 0.0046 17.6 5.3 1 23 243 265 243 265 0.98 9 17 0.024 1.7 9.6 0.2 1 23 314 337 314 337 0.95 10 17 0.0035 0.24 12.2 0.7 2 23 365 387 364 387 0.93 11 17 0.019 1.3 9.9 1.4 2 23 409 430 408 430 0.97 12 17 0.00086 0.06 14.1 1.2 1 23 434 457 434 457 0.95 13 17 0.93 65 4.6 0.7 2 19 461 478 460 478 0.85 14 17 0.069 4.8 8.1 0.5 1 20 493 512 493 516 0.77 15 17 0.0013 0.088 13.6 4.1 1 23 523 546 523 546 0.96 16 17 0.00042 0.029 15.1 2.1 1 23 552 574 552 574 0.97 17 17 0.0007 0.049 14.4 1.8 1 23 580 603 580 603 0.97
Sequence Information
- Coding Sequence
- ATGGGAGCGAGCTTTAAATGCTTCTTCTGTGCGAAATACTTCTCGGATCCCGGAGAACTGATGCTCCATACACAATCCCACAAGAAAGATATAAAAGACAGAAAGATTATTTTAGATAAATATATACCGAAAGGTAAAAGGACGTTGCTAGTGGACATATCCGAATTAAAATGTCGCTTATGCGACCAAATGTTTCCAAATCTCGATGAAATTCGTGACCATTTAAAAATTTATCACGAAAAATCTTTTCTACCAGCAGGCAATGGAATGACCGAGTATAACATGCAATTGAGGAACGGTTACTACAGCTGTCATATATGCTATCAGGAATTCCATTCGTTTGTCCTCTTGAATTCTCACATAAATTGTCACGTCGGTAAGGTCGTTTGTGAGAGTTGTGGCGTTGCCTTCCTCAATCAGCATCTATTGATGAAACACAGAGAAAAGCATCTAATAAATAGATATAAATGTCCAAACTGCGAGAAGACATTCAACAAGAAAAGTCAAATCAAATATCATACAGAAATTGTTCATAAAGGCAAGGAAAGGGTCAAGCTAAAGAAATGTCCGCTGTGCAGCGAGAGCTTTAAAGAGCATTACAGCAAGATGATACATTTGAAAGCAGTTCACGGGATCTTTAAGACATTTCATTGCCATATTTGCAAGACTAGTTTCAGCACACGGCGATCTCTCACCGAGCACACGACAAGACATCACACCGAAAAATATAAATGTGAAATCTGCTCTAAGTGCTTTAGCATAGAATCTAAATTGAAACAGCACATGTGCGGGCACACGGGCCAACATTCCGACACTGCCGGTGATAAGGATTGGGCGAAAATAGCAGAAAGACGCGGTCGAGGACCCCTATTGAGAGACAATTCCATTAAAATTCTCCAAAACTCAACAATGTTTGTCTTCCAGTGGCACAAAAGTAGATTTACCTGTTTCCTTTGCAAGGCACCGTTCATAGATATACAATCATTGAGAGATCACACTAAGGCAGAACACGATGGCGTTGAGAAATGTAAAATAGAAAAGAAGATAATAGCCCAACAAAATAAACTGCTCAAAGTGGAAATATCTATTCTGAAGTGTAAACAGTGCGATGGGGACTTCAAGACGCTTTCTGATTTCCGTCTTCATCTGGAGGAGCAGCACGAGGTGGAATTCAAAGAGGGCGGCGATTTGCTGGTGCCGTTCAAGTTGGAGAGCGAAGGTCTCAAATGTCAAACGTGCAGAGAAAGTTTTACATTGTTCAGACTCCTCAGCATCCATGTGAACAAGCATTACCAGAACCACGTGTGTCACGTCTGTGGAGCTGGTTTCACAAGTTTGGTGCTGCTCAACCTCCACAGAACGAGATCGCACAGGCTGATAAAATGCAACGAGTGCAATTTGATATTTCATAATCGTAAGGGCAAAAAAATACACGACATAGACCGTCACAACGTAAGATTCGAACGCAAGCTTCGTTTCCTGTGCCCGTACTGCGATGAGAGGTTCTTTCAAGAGAATCTAAAAATACAACACCTGGTCGACAAGCATGGCGTTGAAAAACCGCAGCATAGATGCAATTTATGCGACAAAGTCTTTATAACCAGAAGCCTCTGTAACAATCACATCAAAAATGTCCACAAAAAAGAAAAAAAACACGTATGCGATGTATGCAGTAAGCTATTTTACACGAAATCCGACGTGCAAAGACACAGAGTGACGCACACGGGCGAGAAAAAGTTCACCTGCCTGGTCTGCAATAACTTGTTCGCAACGAGAGACTCACTGAAGAGGCATACGAAAAGGACCCACGTTGAGAATTAA
- Protein Sequence
- MGASFKCFFCAKYFSDPGELMLHTQSHKKDIKDRKIILDKYIPKGKRTLLVDISELKCRLCDQMFPNLDEIRDHLKIYHEKSFLPAGNGMTEYNMQLRNGYYSCHICYQEFHSFVLLNSHINCHVGKVVCESCGVAFLNQHLLMKHREKHLINRYKCPNCEKTFNKKSQIKYHTEIVHKGKERVKLKKCPLCSESFKEHYSKMIHLKAVHGIFKTFHCHICKTSFSTRRSLTEHTTRHHTEKYKCEICSKCFSIESKLKQHMCGHTGQHSDTAGDKDWAKIAERRGRGPLLRDNSIKILQNSTMFVFQWHKSRFTCFLCKAPFIDIQSLRDHTKAEHDGVEKCKIEKKIIAQQNKLLKVEISILKCKQCDGDFKTLSDFRLHLEEQHEVEFKEGGDLLVPFKLESEGLKCQTCRESFTLFRLLSIHVNKHYQNHVCHVCGAGFTSLVLLNLHRTRSHRLIKCNECNLIFHNRKGKKIHDIDRHNVRFERKLRFLCPYCDERFFQENLKIQHLVDKHGVEKPQHRCNLCDKVFITRSLCNNHIKNVHKKEKKHVCDVCSKLFYTKSDVQRHRVTHTGEKKFTCLVCNNLFATRDSLKRHTKRTHVEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -