Dple004042.1
Basic Information
- Insect
- Danaus plexippus
- Gene Symbol
- -
- Assembly
- GCA_018135715.1
- Location
- JAEQBL010000033.1:533236-538055[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.74 52 4.9 0.5 1 23 74 97 74 97 0.89 2 27 0.002 0.14 12.9 0.7 2 23 167 188 166 188 0.97 3 27 0.0012 0.082 13.7 0.0 1 23 192 214 192 214 0.98 4 27 0.022 1.5 9.7 0.5 1 23 219 242 219 242 0.87 5 27 1.1 77 4.3 1.0 2 23 250 272 250 272 0.95 6 27 6.7e-05 0.0047 17.6 0.4 2 23 280 302 279 302 0.97 7 27 0.0022 0.16 12.8 4.9 1 23 308 330 308 330 0.97 8 27 0.0049 0.34 11.7 0.1 3 23 338 358 336 358 0.98 9 27 0.0093 0.64 10.9 0.2 1 21 432 452 432 455 0.90 10 27 0.2 14 6.7 0.3 2 23 485 507 484 507 0.94 11 27 0.032 2.2 9.2 2.9 2 23 530 551 529 551 0.97 12 27 0.024 1.6 9.6 0.6 1 23 555 577 555 577 0.95 13 27 0.035 2.4 9.1 3.4 1 23 582 605 582 605 0.97 14 27 0.00048 0.033 14.9 4.6 2 23 643 665 643 665 0.97 15 27 5.5e-05 0.0039 17.9 2.4 1 23 671 693 671 693 0.97 16 27 5.9e-06 0.00041 20.9 0.5 1 23 699 721 699 721 0.99 17 27 0.027 1.8 9.4 2.1 1 17 727 743 727 744 0.86 18 27 0.2 14 6.6 1.8 1 23 798 821 798 821 0.95 19 27 4.7 3.3e+02 2.4 0.1 2 23 848 870 847 870 0.79 20 27 0.0043 0.3 11.9 2.6 2 23 893 914 892 914 0.96 21 27 0.27 18 6.3 0.7 1 17 918 934 918 940 0.86 22 27 0.0057 0.4 11.5 0.9 1 23 945 968 945 968 0.96 23 27 0.47 33 5.5 4.8 1 23 975 998 975 998 0.94 24 27 0.0011 0.076 13.8 1.2 2 23 1006 1028 1005 1028 0.96 25 27 0.0032 0.22 12.3 3.5 1 23 1034 1056 1034 1056 0.97 26 27 9.9e-05 0.0069 17.1 1.8 1 23 1062 1085 1062 1085 0.98 27 27 0.0008 0.056 14.2 0.7 2 23 1092 1114 1091 1114 0.93
Sequence Information
- Coding Sequence
- ATGAACAATTGTAGGCTACGTCGGAAAGTTTTCGTCGTAAATGGCGAACAAGTGGAAGATTTACTTCAGAGAAATTACAAGAAAATTAATTTTGGAACAGGAAAAAAGCAAAATAGTAAACCAACGATCAGAGGGGAAGTCGTAAAGCATCGCCAGAATGTCATCGAAATATTGTTAAATTCAAACGCAACACCAATTCGTTGTAAAAACGATCTCGGGTATAGCTGCATATTTTGCAATGATCACTATCCAAGTCCATCCGGTTTGAAGAAACACACATTAATTGGACACGATGAGGATGCGGTTCTAAAAGTCGTTAAGGACATCCGAATGTACACTGTTAAATTAGACATCACTGATCTGCAGTGCACAATATGTGAAGCCGATTTAGATAATATCCATGGCCTAGTCGAGCATTTGGTTTGCGACCATGGCCGTGTGTTACACCCGGAGGTCACGAACCATCTAGTGCCATTCAAATTTAATGAACAAGATTTGAAATGTGCCATGTGTGAGAATAAGTTCGCGAAGTTCAGAAATTTGATCGAACACATGAACACGCATTTTAGGAATTACGTGTGCGATGTTTGCGGCGCTGGTTTCGTGAATCGCGACATACTGAGGAGCCATCTAAAGATACATAGGACCGGCACGTTTAATTGTGAACTATGTCCGAAATCCTTTAACACGTTGGTGAAAAAAAAGTCACATGTGACGGCGGTTCACCAAAAAGGGTGCATGACAAGGAAATGCGGTTACTGTAATGAATTGTTCGATGATTATAATAAGAAAAATGCCCATCTAACAAAATTCCATGGCGTCGATATGGCCGCTGTGAAATGTAAATTGTGCGACGAGACATTCTCGAACCAGACGGCGGTTAGAGTTCACGTCAGGAAGATACATTTGTTGGAGAGGAAACATGAATGTGGCGTATGCGAGAAGAAGTTCTTCCACAAAAAGGATATGACCAAACATATGGTCAGTCACACTAAGGAGAGAAAATATTGGTGCACTGTTTGTGAAACGCCTTTCGGCCTTAAATTTACTTTGGCTCAACACATGCGAGTGCATGCTAAGGATAAAAAAATTATAACGAACAGTAGATGTGTCGTCGTGAACCATGAACCGATAAAAATAGATTGGGAAGGAAAGAAGAACATTGAAATAAGGCTAATGCCTGTTAGAAAGTTACCGTTTCCACATACGGATTTGCAAAAGCATCGCTATAATATTAGAGAAATATTGCACAGCTCTAATGCGACGCCCATACGCGGCCACAAAGACCGCGGCTACACTTGTAACTTTTGCGAAAATGAATTCGAGAATCCCGCCGATTTAAAACAGCACAATTTAGATTGGCACACTTATAACTTAAGCACCGACGACATTGAAGTTTTGGTCCCATCCAATCTACCCCAGGTCTGTGTAAAATTGGACATCACAGGTCTTACTTGCAGTTTATGCCAAGAAAGCGTAGACTCTGTCGAAGAGCTGTGCGACCACCTGCAACAAGCTCATGATAGGACAATTTTTGACGACATAACGCATCAAATACTACCATTTAAATTCAACGATCGAATCCTCCAATGCCACATATGTAATAATATATACAATAAATTCAAAAAGCTCATGGAACATATGAACAATCATTACAGCAACTATGTGTGTGACGTGTGCGAAGCTGGTTTCGTCAATAAAAGAAAACTTCATTATCACAAGATCGGACACAACGACGGAGATTTCAAGTGTGATGTGTGCGTAAAACGCTTCCGCACTTTCGGCAGCAAAAGATATCACGAACGGCGATACCATGACAAGAACAGGCTGTTTAACAAATGCGGATACTGCAATGCGCTGTTCAAGGGCATGAGGGAAAAGGATCTTCATCTGGCTAAAGAGCACGGAGTGGCGTCATTTGCGAGAAAATGTCAAGCCTGTGATAAAATTTTCTCTCATCAGAACGCTTTGCACACGCACATGAGACGATATCACTTGGTGGAAAGGATGCACAAATGCCCAGAATGTGACAAAACATTCTTCTCTACATCCGACGTCAAGATGCACATGGTGAAACATACGGGCGAGCGTGAATACAAGTGTGAAATATGCCTTAAATCTTATGCGAGGAAGTGGACTCTGAGCGAGCATATGCGCATTCACTCGGACGATAGGCGGTTCAAGTGCGAGCATTGTGGACAATCGTTCATACAGAAATGTGTACTACGTAAACTCAAAAAGGAAAAGTTAAATAAGGACGACGACTTCGTTCAGAGAACAGATCTGCCAAGAGGTAGACAAGGAGAAATTTTAGACAAACATCGCACTAATATACGCGAAATTATCAAATGGTCGAACGCTACGCCGATACGATGCCGTGGCGGGATCGGATATGCATGCTGTTTCTGTTCAGACCAATTTCCAAATCCTGCTGACTTAAAACATCACACCATCAAAGCACACGATGATATCACCAAGTCCAAGTTCATGAAGGGCAGGGATATGTACGGATATTTCGTCAAACTAGATATAACCTCTCTACAATGCAACATTTGTGGGCTGGAAAATGACACGTTAGAGCAAATTATGTCGCATTTGAAAGACGAACATGGTAAAAGCATCAGTACTGACATATCGAATCACATATTACCTTTCAAATTTGACAGCGAGATTTTGCGCTGTTTCATGTGCCACAACGTGTTCAATAGGTTCAAGGCATTGCAAGAACACATGAACTTACACTATAGGAATTACGTCTGTGAAGTTTGCGACGCTGGTTTCGTCAATCGCCACCTCCTTTTATGTCACAACGAGGGTCACAAAACGGGTACATTTGCGTGCGATCAATGCGGAAAAATCTTCGACACGCTGAGGAAGAGAAAGTTGCACGAAAGGAAAATTCACAACGGTCTGAACATGCCGCATAAATGCGGTTATTGCAACGAGAGGTTTAAGGAGAACTGTTACAAAAATGAGCATCTCGCCAAAGTTCACGGCATAATCGGTCCTTCTATCAAATGTCAAGCCTGCGAGAAGACGTTTTCGACCCAGCAGACCTGGCTCTTGCACATGAAGAAGTACCATTTGATGCAGAGACAGCACAAATGCACAAAATGCGAAATGGATTTCTTCTCAAAGAGGGAACTCACCGACCACATGGTGAAACACACCGGAACTAGGGACTACAGATGTGAAATGTGTTTCAAATCGTATGGCAGATTGAAGACTCTGAAAGAACACATAAGACGGCTCCATCCAGAAGGCAGAGACATCAAATGCGCTCATTGTGGTCAAGCTTTTGCGAAGAGATTCGCTTTGAAAAGTCATTTACTTGCTAAGCATGGACAAGCGTTGTAA
- Protein Sequence
- MNNCRLRRKVFVVNGEQVEDLLQRNYKKINFGTGKKQNSKPTIRGEVVKHRQNVIEILLNSNATPIRCKNDLGYSCIFCNDHYPSPSGLKKHTLIGHDEDAVLKVVKDIRMYTVKLDITDLQCTICEADLDNIHGLVEHLVCDHGRVLHPEVTNHLVPFKFNEQDLKCAMCENKFAKFRNLIEHMNTHFRNYVCDVCGAGFVNRDILRSHLKIHRTGTFNCELCPKSFNTLVKKKSHVTAVHQKGCMTRKCGYCNELFDDYNKKNAHLTKFHGVDMAAVKCKLCDETFSNQTAVRVHVRKIHLLERKHECGVCEKKFFHKKDMTKHMVSHTKERKYWCTVCETPFGLKFTLAQHMRVHAKDKKIITNSRCVVVNHEPIKIDWEGKKNIEIRLMPVRKLPFPHTDLQKHRYNIREILHSSNATPIRGHKDRGYTCNFCENEFENPADLKQHNLDWHTYNLSTDDIEVLVPSNLPQVCVKLDITGLTCSLCQESVDSVEELCDHLQQAHDRTIFDDITHQILPFKFNDRILQCHICNNIYNKFKKLMEHMNNHYSNYVCDVCEAGFVNKRKLHYHKIGHNDGDFKCDVCVKRFRTFGSKRYHERRYHDKNRLFNKCGYCNALFKGMREKDLHLAKEHGVASFARKCQACDKIFSHQNALHTHMRRYHLVERMHKCPECDKTFFSTSDVKMHMVKHTGEREYKCEICLKSYARKWTLSEHMRIHSDDRRFKCEHCGQSFIQKCVLRKLKKEKLNKDDDFVQRTDLPRGRQGEILDKHRTNIREIIKWSNATPIRCRGGIGYACCFCSDQFPNPADLKHHTIKAHDDITKSKFMKGRDMYGYFVKLDITSLQCNICGLENDTLEQIMSHLKDEHGKSISTDISNHILPFKFDSEILRCFMCHNVFNRFKALQEHMNLHYRNYVCEVCDAGFVNRHLLLCHNEGHKTGTFACDQCGKIFDTLRKRKLHERKIHNGLNMPHKCGYCNERFKENCYKNEHLAKVHGIIGPSIKCQACEKTFSTQQTWLLHMKKYHLMQRQHKCTKCEMDFFSKRELTDHMVKHTGTRDYRCEMCFKSYGRLKTLKEHIRRLHPEGRDIKCAHCGQAFAKRFALKSHLLAKHGQAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -