Dple011505.1
Basic Information
- Insect
- Danaus plexippus
- Gene Symbol
- -
- Assembly
- GCA_018135715.1
- Location
- CM030930.1:15727798-15738941[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.2e-05 0.0036 18.0 2.1 1 23 187 209 187 209 0.97 2 13 5.1e-06 0.00035 21.1 1.6 3 23 223 243 222 243 0.98 3 13 4.4e-05 0.0031 18.2 2.1 2 23 252 273 252 273 0.98 4 13 0.00027 0.019 15.7 2.1 1 23 279 301 279 301 0.98 5 13 3.5e-05 0.0024 18.5 0.7 1 23 307 329 307 329 0.97 6 13 1.4e-05 0.001 19.7 8.4 2 23 336 357 335 357 0.97 7 13 1.1e-05 0.00073 20.1 0.7 1 23 363 385 363 385 0.98 8 13 3.2e-05 0.0022 18.6 1.9 1 23 391 413 391 413 0.98 9 13 0.00017 0.012 16.3 0.6 1 23 419 441 419 441 0.98 10 13 0.00034 0.024 15.4 1.8 1 23 447 469 447 469 0.97 11 13 2.2e-06 0.00015 22.3 0.3 1 23 475 497 475 497 0.98 12 13 6e-06 0.00042 20.9 3.8 1 23 503 525 503 525 0.99 13 13 0.0001 0.0072 17.0 3.5 1 23 588 610 588 610 0.98
Sequence Information
- Coding Sequence
- ATGGCTGCCGCTATTAAAACGCAAAAGTACAACTTTGAGAAGATATGTCGCGCTTGTTTGCAGATAAAGAAAGATATGAGACCATTGTTCGAACAGCTCACAGCTACCATGTTGATGGGCATATCAAAAGTGCAGGTGTCTGTGGGCGACGGTCTTCCGTCCCAGTTGTGTCTGCAATGCGTGCATCAGATCTCAAGGTGTCACGCCTTCAAGGATCTGGTGGAGAGGAACGACGTGGTCCTCCGCGAACAGGCGAAAGCAATGGCTGAAGAGACGCTCAAGAAGGATGAGGTGCTCGCGGAAACGAACCAGTACATCCAGTTTATAGAAGTGCCGAGCCTGAACAACACCGCCAGCCAATTACTGGACAGCTTCTTCCCCGAGACCTCCAACGACACCAACGTCACGCAGGAGATATTGAATAAGGACGACTTCGACGTTGACAAGCTGGAACCTTCCAGTGCAGTGGCCAAGGCGGAGGAGGCGTTGAATTCAGACGAGGAGAACTATCTCCAGATGGTTGTATTCCAAGCCACTTCATCAGTGGCCCCGTTCAGACACGTCTGCAATCTCTGTCAGAAAGAGTTCAAATACGCCAAGTGGCTGAAGATGCACATGCTATCTCACTCTAACTGGATCAAAGCGAACTGCAAGAAGCCGCCGATGTGTCACATATGCGAGAGAACGTTCAAGGGTCCAGGGATGTTGAAGATGCACATGAGGACCCACGAACAGCGACCTCCCAAACAGCCGACGTGTTCCGTCTGCCAGAGGACCTTCCCCACCAAGACCTTACTGTATAGACACAGGCAGACACACTTCGAACAGAAGACACACCAGTGCACGGTTTGCGAGAAGCGGTTCTTCAGCGGGTACGCCCTGAGGTCACATATGGCAAGGCACAGAGGAGAACGGCCGTACATCTGCTCTATATGCCTCAAGAGCTTCTACAACCCCACTGATCTGAAGGTTCACTTCCGCCTGCACACCGGCGAGAAGCCGCTCAAGTGTTCCGAATGTAACAAAACGTTTAGGCGTCACTCTACTTTGTGCCAGCACATGAAGAAGCACAGAGGCATCAGGAACCACGTGTGCAACATATGTAGCAAGGCCTTCTACGAGGTGTCCAAACTGAACGCCCACATGAGAGTTCATACCGGCGAGCGTCCGTTCGAGTGTCAGTTCTGTTCGCGTAAGTTCGCCCAGCAGTCAGCTCTGATCTATCACAAACGGACCCACACAGGGGAGAAGCCTTACGCGTGTAAGGCGTGCCCCGCCAGGTTCACCACCTCCTCCTCGAGGAACAACCACATGATGACGCACACCGGCAATAAGAAGTTCGTGTGTCCAGTGTGTTTCAAAGGCTGCACGTCTCGGTCGGAGCTGCGAGTGCATTCGAGCAAGCACACGGGGGAGAAACTGTTCGCGTGTGAGATCTGCTCTCAGAGGTTCAGCTCGCCCTCCTACCTCGCTGTGCACAGACGGACGCACACGGGAGAGAAGAGATATCAGTGCACTGAATGTGGAAAAGGTTTCGTGGAGTGCACCTCATACAAGAAACATATGAAGACTCACGCGAAGGACAAACCGCAGAATGAAGAGACGAAGACGCAAAACAACCAGGAGGAAGCAGCCAAGCTGCAGGAAACGAGCTTGGAGATAGCTGAAGAAGAGAAGAAAGAAGACAAAGATGTTACAGCGGAAGCGGAAATAAACCAGGACGGACAAATAGTTATACAAGATGCCGGCACCCAGAAGAGATTCAAGTGTGGGCTGTGCGTTAAGAGCTACACGTATTTGCACAGTCTTAAGAAGCACATGCTGAGTCATGTGCAGATGTGCGTGTTCAGTCCGGACGGGTCGGAGAGGATGTACGCCTTCAAGCAGCAACAGCAACAGGAGCAGGAGATGCAGCAGCAGCAGGTGCAGCAGGTGGTGGTGGGCGGGGTGGGGGGAGTGCAGCAGCTAGCGGTGCCCGTCCACCAGCACGTGCAGCCTCTCGTGCCGCAGAATAACCAACACTATCCGGTTATATCGTCGGTTCAGCTGCAACAGACACATCAACAAGTTAATACTCAACCACAACTGCAAGTGCAAACGATTCAGATACATCCTCAACATCAACCCATACAAATACATGCTGTTGGTGTTCAACAAGAACAACTTCACGTGGCCACTAGCAGTTGTCAGACAATGGTGCCCAATATCCTACAGTTACAGCCGGGTGCTGTCGTTTCCGGTTTGGGACAGGAACTGGGTGGTGTCCATCGCATCATATTACAGCCACCTCACGCTCACCCCCACGCCCTGTACACTATACACCACTAG
- Protein Sequence
- MAAAIKTQKYNFEKICRACLQIKKDMRPLFEQLTATMLMGISKVQVSVGDGLPSQLCLQCVHQISRCHAFKDLVERNDVVLREQAKAMAEETLKKDEVLAETNQYIQFIEVPSLNNTASQLLDSFFPETSNDTNVTQEILNKDDFDVDKLEPSSAVAKAEEALNSDEENYLQMVVFQATSSVAPFRHVCNLCQKEFKYAKWLKMHMLSHSNWIKANCKKPPMCHICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYICSICLKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCNICSKAFYEVSKLNAHMRVHTGERPFECQFCSRKFAQQSALIYHKRTHTGEKPYACKACPARFTTSSSRNNHMMTHTGNKKFVCPVCFKGCTSRSELRVHSSKHTGEKLFACEICSQRFSSPSYLAVHRRTHTGEKRYQCTECGKGFVECTSYKKHMKTHAKDKPQNEETKTQNNQEEAAKLQETSLEIAEEEKKEDKDVTAEAEINQDGQIVIQDAGTQKRFKCGLCVKSYTYLHSLKKHMLSHVQMCVFSPDGSERMYAFKQQQQQEQEMQQQQVQQVVVGGVGGVQQLAVPVHQHVQPLVPQNNQHYPVISSVQLQQTHQQVNTQPQLQVQTIQIHPQHQPIQIHAVGVQQEQLHVATSSCQTMVPNILQLQPGAVVSGLGQELGGVHRIILQPPHAHPHALYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034836; iTF_00419161;
- 90% Identity
- iTF_00419161;
- 80% Identity
- -