Dmel025696.1
Basic Information
- Insect
- Danaus melanippus
- Gene Symbol
- stc
- Assembly
- GCA_010014825.1
- Location
- JAAAKD010000756.1:8440864-8446268[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 9.6e-05 2.9 9.7 12.0 1 19 28 50 28 50 0.87 2 9 1.3 4e+04 -3.5 1.7 6 10 80 84 80 84 0.95 3 9 0.093 2.8e+03 0.2 11.2 1 12 90 101 90 101 0.93 4 9 0.023 6.9e+02 2.1 0.2 4 10 105 111 104 112 0.93 5 9 1.5e-06 0.045 15.5 14.0 3 19 119 135 117 135 0.92 6 9 1.2 3.5e+04 -3.4 0.5 6 10 164 168 163 168 0.78 7 9 0.015 4.6e+02 2.7 17.2 1 18 174 190 174 191 0.81 8 9 7.6e-09 0.00023 22.8 10.8 1 18 227 246 227 251 0.87 9 9 0.011 3.2e+02 3.1 12.4 1 19 257 280 257 280 0.85
Sequence Information
- Coding Sequence
- atgaaGATCAATAAAGATCAACGCAAGACTTGTACAGATCCCATACCACTCTGTGGTAACATTTGTGCTAAACCCCTACCGTGTGGACCCGCGGGCGACAAGCATATATGTAAAGAGAGCTGTCACGAAGGTGGTTGCCGCATCTGTCCCGACACGACCCTGTTACAGTGTCGCTGCGGGCACTCGAGCCAAGAGGTGCCGTGTGCTGATCTGCCGCAGATGATCAACAACGTGTTGTGTCAACGAAAATGTAACAAGAAGTTATCATGCGGCCGTCACCGTTGCCACACCCGGTGCTGTGACTCAGCCTCTCACCGCTGCGCCCTCGTCTGCGGCCGTTCCCTCTCGTGTCAGCTGCATAGGTGTGAAGAGTTCTGTCACACTGGACACTGCGCGCCCTGTCCGAGAGTCAgTTTCGACGAGCTCCGTTGTGAGTGTGGCGCGGAGGTGTTGCTCCCGCCGGTCCGCTGCGGCACCAAGCCTCCCGCCTGCAGCGCCCCCTGCCGCAGGAGCAGACCTTGCGGTCATCCGCCACACCACTCCTGCCACTCCGGCGACTGCCCGCCATGCGTCGTGCTTACAACTAAAATGTGTTACGGGAAACATGAAgaACGGAAAACAATACCGTGTTCTCAAGAAGAATTCTCCTGCGGCCTGCCGTGCGGGAAACCTCTTCCTTGCGGTAAACACACCTGTATCAAAATATGTCACAAGGGATCTTGTGATATAAGCACatgtaCTCAGCCGTGTACGTCCAAACGGCCAAGTTGTGGTCACCCGTGCGCGGCGAGGTGTCACTCTAGCGGCGGGGGCTCCTGTCCCAGTGCGGCGCCCTGTCGCCGACCGGTACGAGCCACCTGTCAGTGCGGACGAAAACAAACAGAGCGGGCCTGCTGTGACAACTCCAGGGACTATGCCAAgatGATGAGTACTCTAGCAGCAACGAAAATGCAAGAGGGTGGCACTGTGGATATATCAGAAGTTCAACGACCCGGATCAATGCTTAAAACATTGGAGTGTGACGAGGAATGCTTCGTAGAGGCTCGGAGCCGTCGCCTTGCACTGGCACTTCAGCTGCGAAATCCTGATGTATCCGCCAAGCTCGCGCCACGATATAGCGATCATTTACGAACAACGGCCGCTAGGGAGCCGACCTTCGCACAACAAATACATGACAAGCTGACGGAACTCGTCCAATTAGCTAAAAAGtccAAACAGAAGACGAGAGCTCATTCATTCCCATCTATGAACCGCCAAAAGCGTCAGTTCATCCACGAGCTGTGCGAACATTTCGGATGCGAGAGTGTTGCGTATGACGCTGAACCTAACAGAAACGTTGTTGCTACAGCCGACAAGGAAAAGTCTTGGCTACCGGCTATGAGTGTACTAGAGGTGTTATCCCGTGAGGCCGGTAAGAGACGTGTTCCCGGGCCAGTACTGCGAGCTCCCGCCGCCCCCCTACCGCCGACAAAGGAACTACCCTCCACCACCACAAAGTCTTCATCGGGTGGCTGGGCAACGCTCACATCTACTAACGCGTGGGCGGCCCGCAGTCAGCCCAAGAAAGAAGAAACCAAAATCGACTACTTCGATAACCCTCCAGAGTAA
- Protein Sequence
- MKINKDQRKTCTDPIPLCGNICAKPLPCGPAGDKHICKESCHEGGCRICPDTTLLQCRCGHSSQEVPCADLPQMINNVLCQRKCNKKLSCGRHRCHTRCCDSASHRCALVCGRSLSCQLHRCEEFCHTGHCAPCPRVSFDELRCECGAEVLLPPVRCGTKPPACSAPCRRSRPCGHPPHHSCHSGDCPPCVVLTTKMCYGKHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKICHKGSCDISTCTQPCTSKRPSCGHPCAARCHSSGGGSCPSAAPCRRPVRATCQCGRKQTERACCDNSRDYAKMMSTLAATKMQEGGTVDISEVQRPGSMLKTLECDEECFVEARSRRLALALQLRNPDVSAKLAPRYSDHLRTTAAREPTFAQQIHDKLTELVQLAKKSKQKTRAHSFPSMNRQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLSREAGKRRVPGPVLRAPAAPLPPTKELPSTTTKSSSGGWATLTSTNAWAARSQPKKEETKIDYFDNPPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406397;
- 90% Identity
- -
- 80% Identity
- -