Dmel029434.1
Basic Information
- Insect
- Danaus melanippus
- Gene Symbol
- Sall1
- Assembly
- GCA_010014825.1
- Location
- JAAAKD010000756.1:40922288-40929194[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3 5.6e+02 3.0 0.3 2 23 6 27 5 27 0.95 2 13 0.016 2.9 10.2 0.2 1 23 983 1006 983 1006 0.95 3 13 3.9e-05 0.0072 18.4 1.5 2 23 1109 1130 1108 1130 0.97 4 13 0.0068 1.2 11.3 3.3 1 23 1136 1158 1136 1158 0.98 5 13 0.011 2 10.7 3.0 2 23 1165 1186 1164 1187 0.95 6 13 4.2 7.6e+02 2.6 5.0 5 23 1200 1218 1199 1218 0.97 7 13 0.019 3.5 9.9 1.1 3 23 1225 1246 1224 1246 0.96 8 13 0.02 3.6 9.9 0.1 2 23 1263 1283 1262 1283 0.96 9 13 0.0075 1.4 11.2 1.9 1 20 1289 1308 1289 1311 0.88 10 13 0.0045 0.82 11.9 1.4 1 23 1319 1341 1319 1341 0.98 11 13 0.0053 0.96 11.7 7.2 1 23 1347 1369 1347 1369 0.98 12 13 6.1e-06 0.0011 20.9 1.3 1 23 1375 1399 1375 1399 0.98 13 13 0.00096 0.18 14.0 5.1 1 23 1405 1427 1405 1428 0.95
Sequence Information
- Coding Sequence
- ATGGATCAGAAAGTGCAATGTCCTGTGTGTACACTGTACCTACATAATGGAATGTCCTTAGAGTCACATCTAGACACACATCCAAAAGATCAAGTTATTAAAGCATTGTGCTGTCTCTCAAAGAGCAGCAGTAGTAGTAGCAGCAATACCTTTAGTAGTAGAACACCTACCCCTTTGACCTCAGAGAGATCTTACAGGAGTAGGTCAAGAACCCCTGCCACGGATGATAGTGGTCGATGGGCAGCCTCACAtcgaaataatgaaaatgaaaggTTCTGGAGGAGGACTCCGAGCCGAACAAAGTCTACACCGACATCTAATACCTCAAGAAATGCAACACCAGACCTTAGAATTGGAAGTATTACATTTGAAAACACCTCAAACAACAATTCCACTCAGTGTTCTGACTCTTACACAGTGAAATCTGACAAAACTCAGACATACGGTTCTAATGCACCATCATCTGAGTTTGATCAACCATACCCGTTCTTTGCTGAGCAACAAGATGATCTGGAGATCAAATTCTCACGCAGTTCTGAGTATAGTCCTCAGATTGAAAACACAAgcaatatttttggatataacTTGCCAATGATGGGGTCGGCCTCTAAAATACCTTCTGCCAATCCAATAGCATCCAGAAGGGGGAGTGATTATGTTAAAATAGTGCCAAAATCTGGTAATATACTATTAAAGAGTAATGTTGGAGGACTGCCCTACCTGTCGCCAGGGGGAAAACCAATGCATGTTGTACTGCCTAATGCTCCACCATTTGCACAGAAGAATTTGCAGAATAATCTGGTTATGTCGGGATCATTACAAGGATCATCAACAATGGACCCGAAAACAGTAACTTCAAATTCTAGCCAGTATAACCAATTGACCTCTGACACGTTTACACAAAGCAGTACAGTTGTCACTCAGaattcacaaattatttataggGAAATGGTTCACAATGTTGATGGCAAACCATACATTTCAAATGTACCGTCCACGGTTGGAGGTCAGGAAAATGCCACAAACGTAGCACAATCTAGTTCAATGTACCAAAACGTGATGGTTGTTGACCAGTTCGGTAACACTTCATGTATGTACACGTCACCACATTTATTACCTAAAACAAATAgttcttttaatgaaaatttatcatATGTTCAAAATGTGCCAGAAAAGTCTGTTCCTAATGTAGTTAATGACGCAAATAAGACTCTGATTATCGAAGTGAGCCCCATGTTACCACCTGAAACTTCTAGCAGCGCAAGTGTGAGTCCAAGCTCACAGCGGACGGCACCACAgtctgcaataaaaaaaaatgatagagAAAAGGCAGAATCGAAGAGTGATTCCTCCGGATCGACTAAAGGTCTAAAAATTCTAAGCAATATTAAGGTAGAAGTTCCTGTGCAGCATCACAAAAATATGCTCAACACTGTGATGGATCTTACGGGTTCCACAGACTCCGACTATCCCGAACAGTCGGTTACACCGGAGAAGATATTACCAGATCTTGATGATAATCCAAGTACGAACGATGACTGTACTCAGCCATCAATCGCAAGCGTTGACAGTATCGGTTCAAATTCATTTTCGGTTATCAAAAATTCAAGTAATTCGTCATTTAAAGAAAGTGTCAGTAAGCCAGGCAGCATTGACAACAAATTGGATGGCGAGTTCTCGGACAGCTGCCCCGTTCCTGATCTGATATGCAATGAGAAACCATCGATATCACCTTGCAGCGAGCTGTCAGAACACGGGGACAACTCTACCGATCGAACATCCCCCATGCCTAAGCCAGAAAGCAGTCAATCAGTCATCTCCACCAACACCACAGACGCTGATAAAAAACCGCATACTAAAACAAGACACAATTTACTCAGACTCAATAATATATTCGTCAAAAAGCATAAAAAGGTCCTGCAAATTAAAAACGCTAAATTGTTTCCGCCTAATCACAGTCAGATACAAGATACGAGAGAATCTTCCTCATCTAACAAATCACCAGAAAATTTTAGCATCAATAAAATTCATTCCGAAAACGGGAACTCGAAACTCGCTGGAAACATTCATAACATGAGTATCGAAAAGATGAAAACTATTGAGGAACATCAGAACGAGTTTGACGCTAACACGGAGGAACAATCCATGGACATTGAACCAGTGACACCGTCTAATGTCAACCACGGGCACTACACCACCACAGTCGATATGGTGCACGTGAAAGAGGAAGTGAATTCCAGCAACGACTTCAGCAATGAAGAGAGGTCGTCCACCGATATCGCGCCCATGGAGACCTTGAGACCTATAAACGTCATCAACTACAGCAACATGACGGGGGATTTTGACGAGGAATCAAACCACAGGGAACTGTTGGAATTGGAAGCAGCTtcgaaaaataaacaattcgtCTCGATGATGAATGAAAACTACTTCGGAGACAACATCTACGCCGATTACTTTACGCCAGATCGCGTGGAAGCCTTCGACGCAGCCAAAGAGTCCAATTACGTGAAAGACAACACCAAGGATCCCATGTACATTTGGGGGGAACCGTCTCAGAAGGAGAGCGAATTCGTCTTACCAAACTTCATACACGAGAGTTACAAGATAGCTGAAAACGGGGTCGACTATAACGATATGGCGGGTGATAACCAAGTGGAAGTGGACAGGTGTGAGAGGGACAGCAAGGCGGACGTGTTGAGCGAGGGGGAGCCGCCGCTGAACATCTGTTCCGACGAGAGGATGCCGCCGCGGGGTGAACTCAGCGGCCAGGAGAGCAACGGCGATATGGAATCCCCTTGGAACGGGATGTATTCGGGTGTGCCGCCCACGGAGCCCTACGACCTGATGGCTCGCGAGAGCTGGGTGTCCGATGCCTCCGAGGATGAAGGCAATGAAAAGACtgaaaatatCGAGGAGGAAATCCATTTCCCGAAGATGAGGCAATACAATTGTGCTCAGTGCAGTACAAAGTTTGCGACTTTGAAGGAGATGAGAGCTCACCGAGCGATCGCCCACGCTCTGCCCACCTGTTCCAGTACGAAGACCTCCTACAGCCGTCTCATGACCGCCCGGGCCATCAAGAAGGAGGAGAAACCTGATGAATCTGTATTAGCCGGCAATCTCCTCACGTTGGATTCAAAGGATACAATGGCGACCACCATGATGCAGGTGTACGACTCCATGAACGAAACCAAGCCGCAGATAGAAAGACTGATCAAATCTGAAACCAAGAAGAGGCGGCGGGACTACGTCTGCCCCACTTGCAAGGAAGACCAGCTAACGGAGGCCGGCTTCCACGCGCATCTCAAGATCCATCCCTTGGAGTGTCTCACGTGTGGGAAATGCTTCTTCAGACGAGCGAACCTCGCTCTGCATGCGAGGACTCATACCGGGATAAAGAATTTTAAATGTGAGATCTGCGAGAAGCGTTTCCTCACACGTCAGAAGCTGACGGAACACCACAACGTCCACACCGGCCGCACTCCCGTCAAGTGCACCATGTGCGACGACACCTTCCGCAGATACTCCAACATGGTACAGCACAGAGACAGACATCACTTCAAAAAGAAGGCGAAGGTTCGAGATTTTCTTTGTCACTGCGGGGCGGTGTTCCACTCGAGGGCGAAGCTCCACTGGCACAAGGAGACCCACGAGGACAAGCCCAAGGCGTGTCTGTACTGCAGCGACAAGTTCGTTCACGCGGCGTCGCTCACACGCCACGTGAGACGGACTCACAACGAGCACTTCAGCTCGCTGAGGATCAAGGGCAAGCTGGAGAACGTACCGTGTCCTGTCTGTAAACagATGTACCTTCGAACGAACCTCCGAGCTCATCTCCTGACTCACAGCGGGAAGCGGCCGTACCACTGCATCATATGCAACAAGGGGTTCACCACCAAGTGGAACCTGAAGCTACACAGGTGGACCCACCTGAGTCGATCAGCGAAGCCCTACAAATGTACTCTATGCAAGGGAGCCTTCATCAGGCACACGGAGTACATCTCACATATGAACGCTCACAAATCAGTGCGTCCGTACACCTGCAACTACTGCGGCTGCCAGTTCATCAGGAAGTACAACTGTCAGCGACACGTGCGGGAACACGAGACAGCTAAGAAGTACGTGTGCAAAGTACCGGAGTGCGGAAAGTCATTCCACAGGAGTTACTATCTGTCCGAACACATGAAGGTGCACAGCGGGGCTCGCCCGTTCTCGTGCAACATATGCGGGAAGACGTCAAGTAATAAGTCGAATCACAACAAGCACGTCAAAATACACCACGCCAGGGAACCGGTCGCCACTGAGGCTTAG
- Protein Sequence
- MDQKVQCPVCTLYLHNGMSLESHLDTHPKDQVIKALCCLSKSSSSSSSNTFSSRTPTPLTSERSYRSRSRTPATDDSGRWAASHRNNENERFWRRTPSRTKSTPTSNTSRNATPDLRIGSITFENTSNNNSTQCSDSYTVKSDKTQTYGSNAPSSEFDQPYPFFAEQQDDLEIKFSRSSEYSPQIENTSNIFGYNLPMMGSASKIPSANPIASRRGSDYVKIVPKSGNILLKSNVGGLPYLSPGGKPMHVVLPNAPPFAQKNLQNNLVMSGSLQGSSTMDPKTVTSNSSQYNQLTSDTFTQSSTVVTQNSQIIYREMVHNVDGKPYISNVPSTVGGQENATNVAQSSSMYQNVMVVDQFGNTSCMYTSPHLLPKTNSSFNENLSYVQNVPEKSVPNVVNDANKTLIIEVSPMLPPETSSSASVSPSSQRTAPQSAIKKNDREKAESKSDSSGSTKGLKILSNIKVEVPVQHHKNMLNTVMDLTGSTDSDYPEQSVTPEKILPDLDDNPSTNDDCTQPSIASVDSIGSNSFSVIKNSSNSSFKESVSKPGSIDNKLDGEFSDSCPVPDLICNEKPSISPCSELSEHGDNSTDRTSPMPKPESSQSVISTNTTDADKKPHTKTRHNLLRLNNIFVKKHKKVLQIKNAKLFPPNHSQIQDTRESSSSNKSPENFSINKIHSENGNSKLAGNIHNMSIEKMKTIEEHQNEFDANTEEQSMDIEPVTPSNVNHGHYTTTVDMVHVKEEVNSSNDFSNEERSSTDIAPMETLRPINVINYSNMTGDFDEESNHRELLELEAASKNKQFVSMMNENYFGDNIYADYFTPDRVEAFDAAKESNYVKDNTKDPMYIWGEPSQKESEFVLPNFIHESYKIAENGVDYNDMAGDNQVEVDRCERDSKADVLSEGEPPLNICSDERMPPRGELSGQESNGDMESPWNGMYSGVPPTEPYDLMARESWVSDASEDEGNEKTENIEEEIHFPKMRQYNCAQCSTKFATLKEMRAHRAIAHALPTCSSTKTSYSRLMTARAIKKEEKPDESVLAGNLLTLDSKDTMATTMMQVYDSMNETKPQIERLIKSETKKRRRDYVCPTCKEDQLTEAGFHAHLKIHPLECLTCGKCFFRRANLALHARTHTGIKNFKCEICEKRFLTRQKLTEHHNVHTGRTPVKCTMCDDTFRRYSNMVQHRDRHHFKKKAKVRDFLCHCGAVFHSRAKLHWHKETHEDKPKACLYCSDKFVHAASLTRHVRRTHNEHFSSLRIKGKLENVPCPVCKQMYLRTNLRAHLLTHSGKRPYHCIICNKGFTTKWNLKLHRWTHLSRSAKPYKCTLCKGAFIRHTEYISHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHETAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034965;
- 90% Identity
- iTF_00421650;
- 80% Identity
- -