Basic Information

Insect: Danaus melanippus
Gene Symbol: -
Assembly: GCA_010014825.1
Location: JAAAKD010000756.1:15920704-15923304[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0024 0.45 12.7 2.5 1 23 291 314 291 314 0.96

2 12 0.024 4.3 9.6 2.4 1 19 331 349 331 353 0.92

3 12 1e-05 0.0019 20.2 3.0 2 23 359 380 358 380 0.97

4 12 5.6e-05 0.01 17.9 0.8 1 23 384 407 384 407 0.96

5 12 0.0031 0.57 12.4 0.2 1 23 410 432 410 432 0.98

6 12 0.0004 0.073 15.2 0.3 2 23 510 531 509 531 0.96

7 12 0.48 89 5.5 0.3 2 23 551 573 550 573 0.94

8 12 9.2e-07 0.00017 23.5 4.1 1 23 579 601 579 601 0.98

9 12 0.00069 0.13 14.5 1.6 1 23 606 628 606 628 0.98

10 12 0.00045 0.082 15.1 1.8 2 21 635 654 634 657 0.93

11 12 2.5 4.7e+02 3.2 2.5 1 19 664 682 664 683 0.88

12 12 0.035 6.5 9.1 2.2 3 19 696 712 695 717 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0024	0.45	12.7	2.5	1	23	291	314	291	314	0.96
2	12	0.024	4.3	9.6	2.4	1	19	331	349	331	353	0.92
3	12	1e-05	0.0019	20.2	3.0	2	23	359	380	358	380	0.97
4	12	5.6e-05	0.01	17.9	0.8	1	23	384	407	384	407	0.96
5	12	0.0031	0.57	12.4	0.2	1	23	410	432	410	432	0.98
6	12	0.0004	0.073	15.2	0.3	2	23	510	531	509	531	0.96
7	12	0.48	89	5.5	0.3	2	23	551	573	550	573	0.94
8	12	9.2e-07	0.00017	23.5	4.1	1	23	579	601	579	601	0.98
9	12	0.00069	0.13	14.5	1.6	1	23	606	628	606	628	0.98
10	12	0.00045	0.082	15.1	1.8	2	21	635	654	634	657	0.93
11	12	2.5	4.7e+02	3.2	2.5	1	19	664	682	664	683	0.88
12	12	0.035	6.5	9.1	2.2	3	19	696	712	695	717	0.95

Sequence Information

Coding Sequence: atggAGGATGAAACTATGATTGCGAACACTGATACATTGTATCCGGTACTGCTTATACCGAAAAAATGCACCACATTGGAGACGAACTGTGAGGCTGCAGATAATGTGTTCATAGATTTAAACATAACCTCCCCCGACACTGAAGGTAATGAAAGCTGTATTTATTCGGGGTTCTGCAACGTTAAACTCATAGACAGCTATGACGTTAACATCAACGAGGGAGATTCTAACAGTCAATCCTCGGATTCCAAGGACGATCACCCGATCCCAGTGATAGTTAGCGAGGCCAGTCAGGATCCGACGTTCAACCAGTCCCAAGTATGGATAGATCCGGCCAGGAGCCCGTATGTTTACAACAGTTATGACGCAGTGGAGTCCCAGGAACATTACTCAGTGTACAGCCAGACCCTCGCCAGCCACATCACAGTCGAGCAACACAATACGTACATAACACAGAATGTTTACAACTACAAAGAACAAGTACCGTATTCGCCGGTCGAGGAATTCGGTCACAAGAAATTCAGAAAGAATCATGGGAATGAAGTAAATCAAGATCTGTACGAGGATGATGAGTTCGAGGGCAGCGTCCTGCTGTCTCAGTTGCCGGAGGAAATCATGAATGAGAAAGAGAATAAAGTGAGAGAGGAATTGATGTACATTAATGTTCAAAGTGAGAATGATGCTTTGAAGCAATTGATGTCCTCTGATATACAGTCTTTGTCCAAGCAACAGAAGACCATAATGTACCTGGGTCATGACTCGCATTATGGGCAGACGGTTCAGAAAATTGCAGTCAACGATCCCTCCTTGGAGTGCAACGGTGTTGGTAATGAAGTCATAGTAGAAAGTACTCAGCCCAATCATAAGAAGTATCAATGTGATAAATGCAAGCAATTTTTTGATCAAATAACAACTTTCAAACAGCACATGGTCAGTAACCATAAGAGTCCAAAGGAGTTATTCCGACCAAACCCCATTAGAGAAATGAAATTCATGTGTACCGAATGTGGCAAATATCTGAAGAATCAGAAGAAACTTGAATTGCACTGTCTCGGTCACGGTAACCCTGAGTTAGAGTGCAACAAATGCCACAAAGTGTTCGCCTCAAAATTCACTCtaagaaatcatttaaaaatacacaaaagaaAATTTCCTTGTATGTATTGTACTAAGACTTATTCAAGTTCCGAGGAACTGAGGTCTCATAGGGCTAAGGTGCATTTCATTTTCATGTGTGAAATTTGTGATTACACAGCAACTAAGTATCCAGATCTGGAGgaacacaaacaaacacacgCCAGTGAAGATTTGAGTGATTCAGACTTCACTCTATCACTCAACGGTGACATCATCAGCGACAGTGGCAGCCTCTCACCGTCCACCGAAGATTACATTATAAGATTCGAAGACTTCGATCAGAAAttggatgaaattaaaaaagccGATTCGGTGATCGCTAAGGTGATGTCGAATAAGATGTTTTTGCTCCACACCAAAAAGGCTCGACgagataaaaagtataaaaaaACTTGCGACGTGTGTTTGAAGACCTTCGATCGTATCGGCGACCTCAAAAGGCATCTCATAGAGCACGTAATTAGAAGCACCCTGGCAAAAACTCCAGTCAACAAAAATGGTACACTCACAATACAATGTGAGGTCTGTCGGGTCGAAAATTTCACTAAAATAGACAAATACAAAGCTCATTTACGCGAACACGCGAAACTCACCTTATATAAATGCACATTTTGTGACAAATCCTTCAGCGACTCGAGCAACTTTTCGAAGCACAAGAAAATTCATGGCACAACATTCTTCCAATGCGATCTCTGTCAAAGAAAATTCAACTCCAAAAAGATGATCGCACAACACATGGAATATCACAATAACAATTCCCCAATCCCCTGCCCCTACTGCGATAAAGAGTTTCATTTTCCTTCGATGCTGAATAAACACGTCAAATGTGTTCACAAAAAAGAAATGTCCAGATTTAGGTGTAGATTCTgtcatgaatattttaaaacgctTAAAGATAAATGGGATCATGAATGGATAATACATAACGTGAGAAAGATTATCGTGGACTGTTTGATTTGCGGTTCGAAGTTTCGAAAGTATTCAGAGTTAAAAAGACATTGCACGGACGTTCACAGTTTAGATATACCTCCCGCCAAAAAGTTACTGCGTAAGCGGAGATTGTTGTAG
Protein Sequence: MEDETMIANTDTLYPVLLIPKKCTTLETNCEAADNVFIDLNITSPDTEGNESCIYSGFCNVKLIDSYDVNINEGDSNSQSSDSKDDHPIPVIVSEASQDPTFNQSQVWIDPARSPYVYNSYDAVESQEHYSVYSQTLASHITVEQHNTYITQNVYNYKEQVPYSPVEEFGHKKFRKNHGNEVNQDLYEDDEFEGSVLLSQLPEEIMNEKENKVREELMYINVQSENDALKQLMSSDIQSLSKQQKTIMYLGHDSHYGQTVQKIAVNDPSLECNGVGNEVIVESTQPNHKKYQCDKCKQFFDQITTFKQHMVSNHKSPKELFRPNPIREMKFMCTECGKYLKNQKKLELHCLGHGNPELECNKCHKVFASKFTLRNHLKIHKRKFPCMYCTKTYSSSEELRSHRAKVHFIFMCEICDYTATKYPDLEEHKQTHASEDLSDSDFTLSLNGDIISDSGSLSPSTEDYIIRFEDFDQKLDEIKKADSVIAKVMSNKMFLLHTKKARRDKKYKKTCDVCLKTFDRIGDLKRHLIEHVIRSTLAKTPVNKNGTLTIQCEVCRVENFTKIDKYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTFFQCDLCQRKFNSKKMIAQHMEYHNNNSPIPCPYCDKEFHFPSMLNKHVKCVHKKEMSRFRCRFCHEYFKTLKDKWDHEWIIHNVRKIIVDCLICGSKFRKYSELKRHCTDVHSLDIPPAKKLLRKRRLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00419229;
90% Identity: iTF_00419977; iTF_00421655; iTF_00419229;
80% Identity: -