Dmel011974.1
Basic Information
- Insect
- Danaus melanippus
- Gene Symbol
- -
- Assembly
- GCA_010014825.1
- Location
- JAAAKD010007556.1:45460-48756[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.9 1.6e+03 1.5 0.1 2 17 53 68 52 69 0.88 2 11 0.00074 0.14 14.4 0.1 1 23 221 244 221 244 0.92 3 11 0.22 40 6.6 0.5 2 23 270 292 269 292 0.94 4 11 0.0038 0.7 12.1 1.0 1 23 315 337 315 337 0.97 5 11 4.9e-05 0.0089 18.1 2.5 1 23 341 363 341 363 0.98 6 11 0.0016 0.3 13.3 6.4 1 23 368 391 368 391 0.97 7 11 0.0033 0.6 12.3 0.3 3 23 400 421 398 421 0.93 8 11 0.014 2.7 10.3 2.6 1 23 427 450 427 450 0.97 9 11 1.2e-05 0.0022 20.0 3.2 2 23 457 478 456 478 0.96 10 11 1.8e-06 0.00033 22.6 2.3 1 23 484 506 484 506 0.95 11 11 2.2e-05 0.004 19.2 3.7 1 23 512 534 512 535 0.96
Sequence Information
- Coding Sequence
- atggAAGGTGCTGGTCTTTGTCGCTGCTGCCTATCAGAAGGTGCTAATAGAGATATAAATACTCCTTACACTTGGTTAGAAAAACAAGAAGTTTACAGAAATATGCTacaagaatgttttaatatcaCACTAAACACAAAAGCGATGTCTGATCTAATTTGTGATATATGTATCAAGAGTCTTCGGGATGCTCACCATTTCAGacaaaaggttttatattcgGAGGAACAGTTGTTGAAAATGATAACTGTTACTGACACAAATAAAAAACTGCTGACGGTCAAATCCGAGCCGTTAGACACTGATGAGAATGATTCCGACAACTACTTCCTTGCCAGCACCATTAAAAATGAATCGCCAACACCCATCCAGAAGATAGAGAGAAAAGTTAACATAAAAGGCAAGAAGAAGGAGCATTTAGAGAAGAATTTGAAGAATTTGGTCAACAAGTTGGCGATCAAGAGCTGTGAGAAAAAACAAATGAAGAAAGACATCAAAGTCATGAAAGGCAGGAAATTGACCATCAAGAAGGATATAGAGATTAACCTGACATTCACTAATACGAGACTGACACAGGATAAGCAAAAACACAGAGAGAACTTACTcacaatattgaaatattcaaatgcAACTCCCTTCAAGGACAAGTCTCTGCTCGGCTTCATCTGTGGATACTGTAACGCTTCATACCCGGATCCAACGGATTTGAAGAATCACACAGATTTGGATCATATTAAAGAGCGTTTGGAGTTCAAATCATCGTTCGATATGACAGAGTATAACGTGAAGCTAGATGTGGTCAACTTGATGTGTACATTGTGCAATGAGAGAATGGAGAATCTGTACAAATTAAGAGATCATCTGATTAAGACACACAACAAAGTCTTCCATAGAGACATAAAGGATCATTTGCTGCAGTTTAAGCTGAAGAAAGGTGATGTTTTTGATTGTGCGTTGTGCCCTTCCACATATGAGACATTCAAAATGTTGAAGCAACACATGAATAAGCATTACTGTAACTACAGCTGCACCAAGTGTGAGAATTCTTTTGCGACCAAACGGTCATTGAACACGCACCAGACCACTCACGAGGAGGGTAGTTTCAAATGCGATCATTGCGACAAAATATTCTCAACTAAAACAAAGAAGCAGTATCACGAGAAAACTAAACATTTGGGTGCTAGAAATATAAGCAATTGTCCCTACTGTGATGTGCCATTCAGGAGTTACTATCAAAGAAACCAACACCTGGTGAAGGTTCACAACTCTGAGGCCCAATACAAGTGCAACGTGTGCAGTAAGGGTTATATACTAAAATCACTTCTGATGTGCCACATAAAGAAGAATCATTTGATGGAGAGGAACTGCCAATGCACGGAATGCGGCTACAAGTTCTTCAGCAAAAAAGCCCTGAAGGCGCACATGATAAAGCACAGCGGTGAGAGGAAATTCCTGTGCGAGGTGTGCCATAAGTCGTACGCGAGGAAATACACTCTGAGAGAGCATATGAGAATCCACAATGATGATAGGAGGTTCAAATGTGATGTATGTGGTACGGCCTTCATACAGAAATGCAGTCTGAAGTCACACTTATTGTCACATCACGGGATTAGTTTAGCCGCCAGTGATATACCTGTATCATGA
- Protein Sequence
- MEGAGLCRCCLSEGANRDINTPYTWLEKQEVYRNMLQECFNITLNTKAMSDLICDICIKSLRDAHHFRQKVLYSEEQLLKMITVTDTNKKLLTVKSEPLDTDENDSDNYFLASTIKNESPTPIQKIERKVNIKGKKKEHLEKNLKNLVNKLAIKSCEKKQMKKDIKVMKGRKLTIKKDIEINLTFTNTRLTQDKQKHRENLLTILKYSNATPFKDKSLLGFICGYCNASYPDPTDLKNHTDLDHIKERLEFKSSFDMTEYNVKLDVVNLMCTLCNERMENLYKLRDHLIKTHNKVFHRDIKDHLLQFKLKKGDVFDCALCPSTYETFKMLKQHMNKHYCNYSCTKCENSFATKRSLNTHQTTHEEGSFKCDHCDKIFSTKTKKQYHEKTKHLGARNISNCPYCDVPFRSYYQRNQHLVKVHNSEAQYKCNVCSKGYILKSLLMCHIKKNHLMERNCQCTECGYKFFSKKALKAHMIKHSGERKFLCEVCHKSYARKYTLREHMRIHNDDRRFKCDVCGTAFIQKCSLKSHLLSHHGISLAASDIPVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00421577;
- 90% Identity
- iTF_00419952;
- 80% Identity
- -