Dmel051950.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Danaus melanippus
Gene Symbol
-
Assembly
GCA_010014825.1
Location
JAAAKD010004992.1:2803-5350[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0002 0.037 16.1 2.5 1 23 169 191 169 191 0.97
2 11 0.0001 0.018 17.1 3.9 1 23 197 220 197 220 0.95
3 11 0.0023 0.41 12.8 0.2 1 23 227 249 227 249 0.97
4 11 0.0031 0.57 12.4 2.4 1 23 256 278 256 278 0.97
5 11 4.2 7.8e+02 2.5 3.2 1 23 284 306 284 306 0.92
6 11 0.00068 0.12 14.5 1.9 1 23 312 335 312 335 0.96
7 11 0.014 2.5 10.4 1.7 2 23 341 360 340 360 0.96
8 11 6.7e-07 0.00012 24.0 4.4 1 23 366 388 366 388 0.98
9 11 1.5e-06 0.00028 22.8 1.1 1 23 394 416 394 416 0.98
10 11 2.5e-05 0.0045 19.0 0.9 1 23 422 445 422 445 0.98
11 11 0.0025 0.46 12.7 1.9 1 21 451 471 451 472 0.95

Sequence Information

Coding Sequence
ATGGCTAATGTAAAGATAAGAATTAACTCATCCAAGCCATCGTCGAATAAAATAAGTGGGAGtggtagaataaaaaaatcatccactacaaataatgataaaaattcaGGTTCTAAAAGTGCTAAAAGTAGTTatgtgaaagaaaaattaaatgacaGTGTGCTAATAAGAgatggaaaacaaaaaaaagacatACAAGTAACCAAAGACAAGTTGTTGACCAAACATGGTCACCTGAAGCTCAAAACCAAGAATAATCTGAAAATTTGTAACAACATTTTAATGAGTGAGTTGCTTAttgataataagaataaaaaaccaACAGAAGACTCTCCATCTAACAGTTCCAATAACAACAACATAGTTATTAATCACAATAAGAACATCAACTCACAACCTGAACCTCAAAATGTGCAAAATGATTCCAATGATGATGACTTTTTTGTAGATTATCAGCCTAAAGTCCGTACTAAACCACCtgcaaagaaacaaaaaaaagggaACTTTGTATGTGATCATTGCCAAAAATCATTTCTTACAAAAGCAACTCTAAGAAGACAtgtctatatacatatgaaattaaaatcccACCCTTGCAAGCACTGTAACAAAGTCTTcagcaaaaatatatacttgtCGGCTCATATAACAAAACAACATCCAGATTGGGAACAGCATTTTATTTGCAACATGTGTGATAGAACATTTTTGTTAAAGGAAAACCTAGTGTTGCATATAGCCAGCCACACACAACCTGTGCCGATGTTCAAATGCATTTATTGCAAGGAGAAATTTAAGAAGCAAATTGAACTAATGCAACATGAAAAAACTCACTTGGTGAGCGGAGTATATGATTGCATTATATGTGAGCAAAGCTTTGATTGCAGAAACAAATTGACATCACATTTTAAAAcccatttaaaagtaaaagactATATATGTCAACATTGCGGTAAAGAGTTTTTGAGGAATAACTCAATGAGACGTCATGTTCAAATATCTCATGTTGGTGTAAGAATACAATGTCCCATATGTAAGAAATATCTAAGAGGGCATTTGACTGAACATATGCGAACTCATGAGAAAAAGCGTCCACATAAATGCCCTGACTGTGGTCTGTGTTTCACTCAATCTACTCAGCTGACCGTCCATAGACGTTCTCACACCGGGGATCGTCCATACCCTTGCAGGATATGTGACAGACCATTCACCCATTCAAATGCACTCAGATTGCATATTCGAAGACACACTGGTGAAAAACCATTTGAATGTGCCATGTGTCCTTTGTCATTTTCACAATTACCACACATGAAGTCACACATGCGTAAAATTCATGGAAAAGAGAAACCATACAGGTGCCAAAAAtgcaaattgttttttaagcTCAAAGCAGATCTTGAAAATCATACCAAAAAGTGTAAAGACGTAGAAAAAGAACTGTCATTTGAGGAGCAAATTCAGGCTTCTGTGTCTGTTAAAGAGGAAGAGGTTGTAGAATCTCCGATGACTTTGTCGCACATGAGATATTTATTGGCTCTCCTCTTGACAATGATTGCTACTAAAGAAAAATTGAAGTACTTAGGGTTCAACAAACGTCTAATTGATGATCTACTAGTTGAATCTCTTGAAGCAATGGGACACACACCCTGTAGAGATGCTTCTCTGACGGCTCTTAAGCGTTTGAAGACAAATATTCAGATTCTGTTGAATGGCACCGTCCCAAAGGCACAGATGGAGAAATTTAAGAACGAAAATAAAAGCATGGAAGACATTCTGGTGTTATTGAcggatgataaaaaataa
Protein Sequence
MANVKIRINSSKPSSNKISGSGRIKKSSTTNNDKNSGSKSAKSSYVKEKLNDSVLIRDGKQKKDIQVTKDKLLTKHGHLKLKTKNNLKICNNILMSELLIDNKNKKPTEDSPSNSSNNNNIVINHNKNINSQPEPQNVQNDSNDDDFFVDYQPKVRTKPPAKKQKKGNFVCDHCQKSFLTKATLRRHVYIHMKLKSHPCKHCNKVFSKNIYLSAHITKQHPDWEQHFICNMCDRTFLLKENLVLHIASHTQPVPMFKCIYCKEKFKKQIELMQHEKTHLVSGVYDCIICEQSFDCRNKLTSHFKTHLKVKDYICQHCGKEFLRNNSMRRHVQISHVGVRIQCPICKKYLRGHLTEHMRTHEKKRPHKCPDCGLCFTQSTQLTVHRRSHTGDRPYPCRICDRPFTHSNALRLHIRRHTGEKPFECAMCPLSFSQLPHMKSHMRKIHGKEKPYRCQKCKLFFKLKADLENHTKKCKDVEKELSFEEQIQASVSVKEEEVVESPMTLSHMRYLLALLLTMIATKEKLKYLGFNKRLIDDLLVESLEAMGHTPCRDASLTALKRLKTNIQILLNGTVPKAQMEKFKNENKSMEDILVLLTDDKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00421573;
90% Identity
iTF_00421573;
80% Identity
-