Dmel049980.1
Basic Information
- Insect
- Danaus melanippus
- Gene Symbol
- -
- Assembly
- GCA_010014825.1
- Location
- JAAAKD010012180.1:16-1700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.015 2.8 10.2 2.8 1 23 98 120 98 120 0.97 2 10 0.034 6.3 9.1 0.1 3 23 147 168 145 168 0.94 3 10 7.6e-05 0.014 17.5 1.1 3 23 191 211 189 211 0.95 4 10 0.058 11 8.4 1.6 2 23 216 237 215 237 0.96 5 10 3.4e-05 0.0063 18.6 2.6 1 23 244 267 244 267 0.97 6 10 0.0035 0.64 12.3 1.9 1 23 273 296 273 296 0.93 7 10 9.9e-05 0.018 17.1 1.8 1 23 302 325 302 325 0.97 8 10 4.4e-05 0.0081 18.2 1.5 1 23 331 353 331 353 0.98 9 10 2.8e-07 5.1e-05 25.1 0.7 1 23 359 381 359 381 0.98 10 10 3.1e-06 0.00057 21.9 2.6 1 23 387 410 387 411 0.97
Sequence Information
- Coding Sequence
- atgatttttccaGTCATAGACGATATTAAGAGTGAAACTAAAAAGAGAAAGTCCGCGAGGCGGAAGTTAAAGAAGAGAAGGAATGAGAACGACCATGAGATGAGGGAAGAAGatttgtacaaaataagaaGAATTAGCGCTCGACTGAAAGAGCTCGAAAATGTTGATCTGCCAGAAAAAACAACGCAAGCTCGGAACGGTTTCAAATTGGATAATACCAAATCTTATACTAATATCGTCACCATAGTAGAAAACTCATACGCATGTCCCTTCGAGACGTCCTTTAGCGATTACTTCTGTGTCTACTGCAGACATCTCTTCACTGACCCCAATAAACTCCGGGAACACACCCTCAGTCACGATCCCCTGACCTTCAAGGAGATCCTGTCAAATGGTCCCAACAACAAGAAAGTCCAAATAGACATTTTCAGGATAGACTGCAGGTTGTGCCCACAAGTTGTAAATGATCTGGAAACACTAAAAGATCATTTGAACAACTCTCATCagatagaatttaatttagtgTCAAATGAGTTCCTTAAATTCAGATTAACTTCCGGTTCGATTGCGTGCACGGAGTGCAACACCAGCTTCAGCTTTTTCCATGCATTGAAGAAGCATATGGCGGCGCATTTCGGGTCATGCATATGCGATGTATGCGGCGCACATTACTTCGAAGAGCGCATGCTGGTGTTGCACCAGAAAACGCACAGAAAGAGCGAGGAATGCTTCACTTGCAAGGACTGCGGGAAGAACTTCAAATCCAAATACTCGAGATATATTCACATATCGAGGCTTCATAAGAAAGAAGCGGCGTACCAGTGCAGCAAGTGTGATGAAGTGTTCTTCTCTTACACATTAAGATATCGACACATGATAGACTTCCACGGCGAAGAGAGGACCTTCCAATGTGAGCAGTGCGATCGGGCTTACGACAGCAGGAAGTCCCTACGCGAGCACAACAGACGTTTCCACCTCAAAATCCTCAAGCATCAGTGCGATCTGTGCGACAAAAGATTCTACCTGCCATCCAGACTTAAAGAGCACATGGCCAGCCACACTGGAGAACGGAATTTCCGCTGCGAGTACTGCGGGAAGAGCTACCCGAGGCTGCGAGGTCTGAAGGTCCACATGCAGTCACACAGCAGCGACAAGAAATACAAGTGCGTTATGTGCAACGCGTCCTTCACACAGAACGTGAATTTAAAAAACCATATCAAGAGACAGCACCACATCCTGGAATTGAACGAATACCAGGATTGA
- Protein Sequence
- MIFPVIDDIKSETKKRKSARRKLKKRRNENDHEMREEDLYKIRRISARLKELENVDLPEKTTQARNGFKLDNTKSYTNIVTIVENSYACPFETSFSDYFCVYCRHLFTDPNKLREHTLSHDPLTFKEILSNGPNNKKVQIDIFRIDCRLCPQVVNDLETLKDHLNNSHQIEFNLVSNEFLKFRLTSGSIACTECNTSFSFFHALKKHMAAHFGSCICDVCGAHYFEERMLVLHQKTHRKSEECFTCKDCGKNFKSKYSRYIHISRLHKKEAAYQCSKCDEVFFSYTLRYRHMIDFHGEERTFQCEQCDRAYDSRKSLREHNRRFHLKILKHQCDLCDKRFYLPSRLKEHMASHTGERNFRCEYCGKSYPRLRGLKVHMQSHSSDKKYKCVMCNASFTQNVNLKNHIKRQHHILELNEYQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00419947;
- 90% Identity
- -
- 80% Identity
- -