Dmel028190.1
Basic Information
- Insect
- Danaus melanippus
- Gene Symbol
- -
- Assembly
- GCA_010014825.1
- Location
- JAAAKD010000756.1:29067196-29069966[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.47 86 5.6 0.2 1 23 35 58 35 58 0.91 2 21 0.0076 1.4 11.2 1.2 3 23 83 103 82 103 0.98 3 21 0.11 21 7.5 0.4 2 21 108 127 107 128 0.93 4 21 0.24 44 6.5 0.1 1 23 169 192 169 192 0.95 5 21 0.38 69 5.9 1.0 2 23 218 240 217 240 0.95 6 21 0.0043 0.78 12.0 0.3 2 23 264 285 263 285 0.94 7 21 9.9e-05 0.018 17.1 0.0 1 23 289 312 289 312 0.97 8 21 0.0096 1.8 10.9 0.6 1 23 316 339 316 339 0.98 9 21 1.9 3.5e+02 3.6 0.6 1 23 344 369 344 369 0.89 10 21 0.12 22 7.4 5.4 1 22 378 399 378 401 0.88 11 21 3.8 7.1e+02 2.7 0.2 1 21 411 431 411 432 0.92 12 21 0.0016 0.3 13.3 1.1 1 21 487 507 487 508 0.96 13 21 0.076 14 8.0 0.1 3 23 537 557 536 557 0.97 14 21 0.014 2.6 10.3 0.7 2 23 580 601 579 601 0.96 15 21 0.014 2.5 10.4 0.4 1 23 605 627 605 627 0.95 16 21 0.032 5.8 9.2 1.3 1 21 632 652 632 655 0.82 17 21 0.011 2.1 10.6 0.5 1 23 661 684 661 684 0.96 18 21 0.0037 0.68 12.2 1.1 3 23 693 714 691 714 0.97 19 21 0.00032 0.058 15.5 1.7 1 23 721 743 721 743 0.97 20 21 0.00013 0.023 16.8 0.2 2 23 747 768 747 768 0.95 21 21 0.0052 0.96 11.7 0.2 2 23 773 795 772 795 0.95
Sequence Information
- Coding Sequence
- ATGGAGGCTCTTAGAATACATATTAAGGAAAAACACATTAACGCTGATTTTAACAGTGCCTTTTATAAGGTTGTTGATGatcttaaaattgatataagccattttaaatgtaatatatgctCGCAAGACATTGAGAACGTTGAAACATTTATGAATCATTTATCAGGGGATCATGGGAAACCAGTTAATTTTGATGTACCTTTTGGTGTGTTGCCGTATAGACAGAATGAGACTGGTGCATGGCTGTGCCTTCACTGTGATAAAATATATCCGGAATTCTCTCAAATAAACAGCCATTTACGAACCCACGCCAAAATATCTACTTGCGATAAGTGCGGGGCGACTTTCCTCTCTGAGCACGGTCTGAAACAACATGAGCGAAATTTCCAATGCTATAAAGCTACGTATAAACCTCGCTTCGGCAAAGCCTTGAAGCATAAGTACaatactgaaattattttacaatgttcAACTGCATGTCCTTTCAGAACGTGGGGTCAAAACTTTAACTGCGTCTTTTGTAGAGTGCAGTCAAATGATCCCAATGGGCTACGAGCTCATATGGCATCCAGACATGCCAACTTTGACATACAACTCGTATTTAGTAGAAAATTACGGAAGGAATTTTTGAAAGTTGATATAACAGATTTGCAGTGTAAACTTTGCTTCATGCACATTGACACTTTAGATGATTTATTGACACATCTCAAAAATGATCACAAACAACCGGTGAATATAGACGTCCAACCGGGAGTCTTGCCGTTCAAGTTGAACGATGGCTCCTGCTGGAAATGCGCTATATGCAAAATACAGTTCTCAGATTTTATATCGTTAAAAAAACACACAGCTGAACACTATCAGAATTACGTTTGCGATACGTGTGGGGAGGGTTTCATCACAGAGGTGGCACTGCGGGCCCACACAAAAATACCacatgataataaatatacctgCAGTAGATGCGTCGCGACGTTCTCTACGTTAGAAGAGAGGAGCgttcatataaaaacacaacATACGAATCTACCCTACATGTGCACTTATTGCAAGGACAAACCGAGGTTCGCCACCTGGGAGCTGAGGAAGCGGCATTTATATGagatacataattataaatccgGGGCGGAAATGTACGAGTGTACTACCTGTCATATGATGTTCAAAACGCGATCACAAAAATATCACCATAACGTTAAAGTTCATCGGACAAAGAAGGAAATAGATTTTGGTTTCTCTTGCGGCCACTGCGCCAGAGGAAGAAGCAGAGAAACAGAAAATGtcactcatataaaaatactccAACAGTCACATCTCGATACAGATAATGATATTAAAGTTGGAGAGAAACGAAAGTATCAAAAAAGTGCTAGATCCCAAGCGAGATTCATGACAAAGAAGAATGCAAGCTCTATTCTCGAATGCTGGTCCGGAATACCATTCAGatggaaaaaaaatagatttaaatgcGCCTATtgtgaagaaaattttaatgagtgTTCGGATTTGAGGACGCACGTTAGACTATGTTCTACCCAGAACAGTGTAGGCAGTATATTcagtaaatttaaagaaatgacTCTCATAAATATGGACGTTAGTGAGGCTGCTTGTCGAATATGTTCTGAGCCGTTCAGAGAACTCGAGGATATGCGAGAGCACGTCATTCGGCACGGTTACGAATTAGATGTGTCACACCCGGACGGTGTAATACCGTTTTGTCTCACAAAAGAATCCTGGTCGTGTGTCTTATGTCGTGAGACATTCAATAACTTTCTGAAACTTTACGAGCATATGAACACCCATTATCAGTACCACATATGTTCGATATGCGGGAAAGGTTACATGACCGGACCGAGGCTAAGGAAACATCTAGAATTACATATAACAGGAACATTTCCTTGCGATAAATGCAAGAAGGTTTTTACAAAACGCACAGGGAGAGACAATCACAAAGCCTACGCCCACGCTAAAGGTCCGCGTTATGAATGCCCACAATGTAATATGAGATTTGAAGGTTATTATGATCGAATGAATCATTTGAAACAAGCTCATAGAGAAAAGGAAGTGAAGTACGGCTGTTCACACTGTGATCTATCATTTAAAACGAGCGGCAAGCGAGCCATCCACGTTAAAACGGTCCACTTTCCTCGTCAGAGTAATTTTAGTTGCCCCTATTGCAAAACCCTATTTAAAACAGCCTTCGGTATGAAACGTCACATGGTAAAACATAATGGAGAAACGTGTACTGTTTGTGgtgaaagttttaataaaagtaaagcaTTAAAAGAACACTTGGCAGGTCACGAGGATGGACTCCGTTGTAAATGGTGCGGAAATACTTTTAAGGAAGCAGCAGTTCTGTTGACACATTTGCGTGAGAAACATCCAGCAGTGGACGAATTGATGATATCCGGGCTGGTTAATGTTTAG
- Protein Sequence
- MEALRIHIKEKHINADFNSAFYKVVDDLKIDISHFKCNICSQDIENVETFMNHLSGDHGKPVNFDVPFGVLPYRQNETGAWLCLHCDKIYPEFSQINSHLRTHAKISTCDKCGATFLSEHGLKQHERNFQCYKATYKPRFGKALKHKYNTEIILQCSTACPFRTWGQNFNCVFCRVQSNDPNGLRAHMASRHANFDIQLVFSRKLRKEFLKVDITDLQCKLCFMHIDTLDDLLTHLKNDHKQPVNIDVQPGVLPFKLNDGSCWKCAICKIQFSDFISLKKHTAEHYQNYVCDTCGEGFITEVALRAHTKIPHDNKYTCSRCVATFSTLEERSVHIKTQHTNLPYMCTYCKDKPRFATWELRKRHLYEIHNYKSGAEMYECTTCHMMFKTRSQKYHHNVKVHRTKKEIDFGFSCGHCARGRSRETENVTHIKILQQSHLDTDNDIKVGEKRKYQKSARSQARFMTKKNASSILECWSGIPFRWKKNRFKCAYCEENFNECSDLRTHVRLCSTQNSVGSIFSKFKEMTLINMDVSEAACRICSEPFRELEDMREHVIRHGYELDVSHPDGVIPFCLTKESWSCVLCRETFNNFLKLYEHMNTHYQYHICSICGKGYMTGPRLRKHLELHITGTFPCDKCKKVFTKRTGRDNHKAYAHAKGPRYECPQCNMRFEGYYDRMNHLKQAHREKEVKYGCSHCDLSFKTSGKRAIHVKTVHFPRQSNFSCPYCKTLFKTAFGMKRHMVKHNGETCTVCGESFNKSKALKEHLAGHEDGLRCKWCGNTFKEAAVLLTHLREKHPAVDELMISGLVNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -