Dmel009917.1
Basic Information
- Insect
- Danaus melanippus
- Gene Symbol
- -
- Assembly
- GCA_010014825.1
- Location
- JAAAKD010002403.1:3776-5854[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3e-05 0.0056 18.7 0.6 1 21 7 27 7 28 0.95 2 17 0.00045 0.083 15.0 0.1 2 23 35 57 34 57 0.96 3 17 2.7e-06 0.0005 22.0 0.5 2 23 66 88 66 88 0.96 4 17 0.00061 0.11 14.6 4.3 2 23 97 119 96 119 0.95 5 17 4.2e-05 0.0077 18.3 0.2 2 23 126 148 126 148 0.96 6 17 0.0017 0.32 13.2 4.3 1 23 229 251 229 252 0.95 7 17 0.86 1.6e+02 4.7 1.3 2 21 260 279 259 280 0.92 8 17 0.56 1e+02 5.3 3.2 3 23 290 311 289 311 0.95 9 17 0.0076 1.4 11.2 5.5 1 23 331 354 331 354 0.96 10 17 3.2e-05 0.0059 18.7 0.9 2 23 361 383 361 383 0.96 11 17 0.00018 0.033 16.3 2.5 2 23 390 412 390 412 0.95 12 17 0.01 1.8 10.8 1.5 1 23 418 441 418 441 0.96 13 17 0.083 15 7.9 5.4 2 23 449 471 449 471 0.95 14 17 0.0018 0.33 13.2 0.3 1 23 478 501 478 501 0.96 15 17 0.61 1.1e+02 5.2 0.1 1 10 508 517 508 522 0.90 16 17 0.0024 0.44 12.8 2.6 3 23 543 564 542 564 0.92 17 17 7.9 1.5e+03 1.7 0.8 1 10 614 623 614 624 0.90
Sequence Information
- Coding Sequence
- atGAAACGGAGAGGTGATTATGTGTGCAATGCCTGCAGCCACTCGTTCACTAGGAAGAGCAACCTGGAGACCCACATCCTAAATGGGAACTGCCAGTCCAATGTCTGTGTGATATGTGAGAGGACATTTGGTAACTCGGCATCATTACAAGGTCATATGTCACGAGGCCATAACAAACTGGGGAAACCTCAGCCCGAGTGTGATTTGTGCGGACGGATATTCACCAGAAAACATAATCTTGTCTCTCACATGATAGTCGTACACTTGCAGGCCGGCAAACATGACATAACTTGTAACTTTTGCGatcgtaaatttaatattgagagGAACTTGAGGAGGCATATGAAGCACAAGCACACAGCTGTAGATTATCCGACCTGTGATATATGCAAGAAAAATTTCAAAGACAAGGAATTGCTTGCGGAGCACATAGAGTCAGCTCATCTTACAAATTTATCAGCGCCAACTGagatttataaggaaaataaaagtgACAAATTACTAAAATGTTGGTCGGAAATACATAAGGACAAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTAAACATAACGCCTTGGAAATTACCTAAGAGGGACAACGCGTTACATACCTGCGAGTTCTGTTCAAACACATTCGCATCGGTGTACGATTTAAAGGATCACATGAAATCACATCACGACATTGAATATAACCTGTCCACTTGCAACGtttgttttaatagattttacagTAAAGAAACCATGTTGTCACATAAAAAGAACTGTTTCCCGCCAAAAAATGTGAACGCCTGCTGTCATTGTGACAAACTGTTCACTGTCATATCTAGCTTGAATTTTCACGTGAGAATATTTCATCCGCAAGCTCAAATAGCTGATTCAAAGATGTCAACGAACCGCGACGATCTCGGTTCCTTTAAATGTGACCACTGCGACAGAATATATTACAGCGACAGGTCCTTGAAACACCATGTCAAATTAAAACATAGCAGCGACGAGGCCGCTGAATGCCAGTACTGTGGGAAAAtatgcaataataaatattatctggcATCCCACATCAAAATAGTTCACAATAACGATTATTTTGCCAAATGCGACTTCTGTGATAAGCAATtcaaatcaaaaagaaatattcgCCGGCACATCGAATACACGCATTTAGGGATGCAGAGGTACAAGTGTATAGAGtgtgaaactttatttaaagagaaaagaAGCTTGAGGAAGCATGTTAGAATCAAACATCCAGACTCGACGGCGTTCCCACAGTGCCATATATGTAAAAAGCGTTTCGAATCAGCAAAATcttgtaaaatacatttaaaactgcTCCATTCATTCAATATGAATACCCATCCGTGTGATTTGTGTTCAGTATCTTTCGATTCACTTGAGGCTCTTAACATTCATCTATCTACCAAACACCTCGCTAAAGACGAAATTTACAAGTGCGAGGAGTGCAATTTAGTTTTCCAAGGACAATTAACATTTGACTGTCACAACGATAATTATCACGCGTGTGAAAGCAAGGAGAGGAATCTTCCGCGATGTATAATATGTGTCAAAGATTTCAGAACTCGTAAGACGTTGAAGCGTCATATAAAAAGGTTCCACGAGGAGTTTAACGTAGAGGAACTAGCTACTTACGGTACTAAGAAACGTGTTTTTAACGTGAATTGCACTGagtgtattaaaaactttaatgatgATTTCTACTTCATGGTGTACTCAAAAATGAAGCACTTGAGCGATTCGTTTATATTCAAATGTGAATTGTGTTCTTATTCATACAACTGTCTCGAATACGCCATACAGAGATATAAACAGAGCGTTGATGTTAAAGGTAAGTTGTACTTGAGTGAGTTATGTACGACGGAAATGAGTGAAAATGATTCGGATAACGAGAAAGTTAAATCTGAGAGCAATCTTGATGTAAAGGATGACATGGAATATGTCGAgtacaatcattttaatattaaaatcgagCCAATGTCACCGTGA
- Protein Sequence
- MKRRGDYVCNACSHSFTRKSNLETHILNGNCQSNVCVICERTFGNSASLQGHMSRGHNKLGKPQPECDLCGRIFTRKHNLVSHMIVVHLQAGKHDITCNFCDRKFNIERNLRRHMKHKHTAVDYPTCDICKKNFKDKELLAEHIESAHLTNLSAPTEIYKENKSDKLLKCWSEIHKDKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNITPWKLPKRDNALHTCEFCSNTFASVYDLKDHMKSHHDIEYNLSTCNVCFNRFYSKETMLSHKKNCFPPKNVNACCHCDKLFTVISSLNFHVRIFHPQAQIADSKMSTNRDDLGSFKCDHCDRIYYSDRSLKHHVKLKHSSDEAAECQYCGKICNNKYYLASHIKIVHNNDYFAKCDFCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRIKHPDSTAFPQCHICKKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFDSLEALNIHLSTKHLAKDEIYKCEECNLVFQGQLTFDCHNDNYHACESKERNLPRCIICVKDFRTRKTLKRHIKRFHEEFNVEELATYGTKKRVFNVNCTECIKNFNDDFYFMVYSKMKHLSDSFIFKCELCSYSYNCLEYAIQRYKQSVDVKGKLYLSELCTTEMSENDSDNEKVKSESNLDVKDDMEYVEYNHFNIKIEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -