Basic Information

Insect: Danaus melanippus
Gene Symbol: prg
Assembly: GCA_010014825.1
Location: JAAAKD010000756.1:25832705-25834515[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.044 8 8.8 1.9 1 23 177 200 177 200 0.89

2 10 0.00017 0.03 16.4 0.4 1 23 206 229 206 229 0.97

3 10 3.2e-06 0.00059 21.8 3.6 1 23 235 257 235 257 0.96

4 10 5.5e-07 0.0001 24.2 5.1 1 23 263 285 263 285 0.99

5 10 1.7e-05 0.0031 19.5 0.1 1 23 291 313 291 313 0.97

6 10 0.00082 0.15 14.2 0.5 1 23 319 341 319 341 0.95

7 10 6.8e-05 0.013 17.6 1.0 2 23 435 457 434 457 0.95

8 10 9e-05 0.017 17.3 2.1 1 23 463 485 463 485 0.97

9 10 1.4e-06 0.00026 22.9 3.7 1 23 491 513 491 513 0.98

10 10 0.0034 0.62 12.3 0.0 3 23 522 542 520 542 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.044	8	8.8	1.9	1	23	177	200	177	200	0.89
2	10	0.00017	0.03	16.4	0.4	1	23	206	229	206	229	0.97
3	10	3.2e-06	0.00059	21.8	3.6	1	23	235	257	235	257	0.96
4	10	5.5e-07	0.0001	24.2	5.1	1	23	263	285	263	285	0.99
5	10	1.7e-05	0.0031	19.5	0.1	1	23	291	313	291	313	0.97
6	10	0.00082	0.15	14.2	0.5	1	23	319	341	319	341	0.95
7	10	6.8e-05	0.013	17.6	1.0	2	23	435	457	434	457	0.95
8	10	9e-05	0.017	17.3	2.1	1	23	463	485	463	485	0.97
9	10	1.4e-06	0.00026	22.9	3.7	1	23	491	513	491	513	0.98
10	10	0.0034	0.62	12.3	0.0	3	23	522	542	520	542	0.92

Sequence Information

Coding Sequence: ATGGATGATTCATTTATCATGGCTAATTTTCACGAGTTATGTCGCCTCTGTTTACGCAAAAGTGAATTCACAATATCAATTTTCGGAGCTGTTCCTGacaatgaagaaaatatatctttaaccTCGAAAATTGCTGAATGTCTCGAGCTGCAGATGGATCCTAATGATGGTCTCCCTACTAGGATCTGCTACAAATGCttatttaaggttaataaaTGCTCCAAATTTAGATTACAGTGTATACAGAGTGAAGCCAGATTAAGACAAATAACTAATCGTGTGAATGAGTTAGATAATTCAAACTCATCagaattaagtaattataattttaacaacacCCCAGAAACATTAAAACCAAAGGCTGAAGATTATATTGTTGAAGATAGTGTTGTGATGGTAGTAGACCCAAGCTTAGACTATGATTCTTCAGAAGAATCTGAGTATATAGATCAAACAGAAACAGAGACTTGTGAAAGAGATAACACACCTGACGGAGAAACAACTTCGGAatccttttataaaaatgtatttatgtgtcAATATTGTGATCAGGCATTTGTGTCTCAAGAAAAGTGTAAAGAACATGAGCAAAATATCCATGACCCAAATCTTCCTTATAAATGTGTGGAGTGCAGTTTAGTATTTTCGGAACGCAGTCAATTTGTTGCACACACTAGGCAAGTCCATGGTAACGATAAACCCTATCATTGCCCAGAATGTGACAAATGCTTTGGTAGACGCTCTGACTTGAGGAAGCATTCTATAGTTCATACTGGTATAAGACCTTTTCAATGCCATTATTGTCTCAAGAGCTTCTCAAGAAATACTAACTTAAGTAAACATTTAAGAATACATGCAGGACACAAGCCCCATGTATGTCCTTTATGCCCGCGAAGCTTTGTAGCAAAAGGTGATTTACAGAGACATGTACTAGTTCACTCCGGTGTAAAACCTTATGCATGTAGGAAATGTCCACTCACATTTGGACGAAGAGATAAGCTGATAAAGCATGAAGTCCGTCATGGACCTGTCAGTccagaaaataaagaatatgaaaatgaCGATGCCCATGACATGGTTGTTAATGTCAACCCTTTTAGTAATCTAATGACATCCCCACCTCAGCACAATATTGAAAACACCAATGAATATGACTTGCCAAGAGTTCCCGACCATATTGCTGGAGATAGtacttttttaaatcaaattcaaaaGAATCCATCCACTTCTAGCAAACCTCAAACAAATTCACCACCTAAGGGGAAAATGGTATCaccgaataaaaataaacccaAGAATATAAAATGTCATCAGTGTCCAAAGAGGTTCTCCTCATTAGATGCTTACAAAACTCATGTGTCCATAGCACATATTGGTTCTAGGATATTTCagtgtaaaatatgtttcaaaaaatTCCCTAGAAAAAGAGAATTTGACCGCCATGTAGCTTCCCATTCTGGTATGAAGCCATTCAGTTGCAGTCAATGTGATAAAAAGTTTACAAGGAAAGATAAACTTAACAAGCATGAACAAACTCATGAATGTCTGGTTGTGAATATGCCTTGCATAGAATGTGGGGCGACATTTGAGAAGAAGCCTGACCTCGTTGCACACATTAAGTCCCACTTTCCAGAAAACTATGACAACAAAATCCTCAATACTGAAATTAAGAAGGAAAATGTACCTGACTTTCCATTGGACAATTTTTATGACTTGGAAACCTGA
Protein Sequence: MDDSFIMANFHELCRLCLRKSEFTISIFGAVPDNEENISLTSKIAECLELQMDPNDGLPTRICYKCLFKVNKCSKFRLQCIQSEARLRQITNRVNELDNSNSSELSNYNFNNTPETLKPKAEDYIVEDSVVMVVDPSLDYDSSEESEYIDQTETETCERDNTPDGETTSESFYKNVFMCQYCDQAFVSQEKCKEHEQNIHDPNLPYKCVECSLVFSERSQFVAHTRQVHGNDKPYHCPECDKCFGRRSDLRKHSIVHTGIRPFQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLQRHVLVHSGVKPYACRKCPLTFGRRDKLIKHEVRHGPVSPENKEYENDDAHDMVVNVNPFSNLMTSPPQHNIENTNEYDLPRVPDHIAGDSTFLNQIQKNPSTSSKPQTNSPPKGKMVSPNKNKPKNIKCHQCPKRFSSLDAYKTHVSIAHIGSRIFQCKICFKKFPRKREFDRHVASHSGMKPFSCSQCDKKFTRKDKLNKHEQTHECLVVNMPCIECGATFEKKPDLVAHIKSHFPENYDNKILNTEIKKENVPDFPLDNFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00353374;
90% Identity: iTF_00421544;
80% Identity: -