Dmel021745.1
Basic Information
- Insect
- Danaus melanippus
- Gene Symbol
- -
- Assembly
- GCA_010014825.1
- Location
- JAAAKD010007556.1:75300003-75300992[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-08 3.5e-05 25.1 0.1 7 40 57 90 56 96 0.85
Sequence Information
- Coding Sequence
- ATGGCCGCTAATGTTTGTAGAAAACCTGCAGTCGAAAACAATCACGACGCGAAGCGTAcgcttgtttttataaaattctggCAGAATAAACATAACATCATGGAAAGCGGATCACCAGCTTCTACCACAAGGAAAAGAAGGGCTCAATGGGCTTCGCAACAGACGGAAAACGCTGTAAAAATGGTAGAAAGGGGAATATTATCTACATATGCTGCTGCAGCCAGATATAACATCCCAAGAAGAACCCTACGCAACCATCTAAAGAGTGGTTCGACTACACGAAAGCTAGGTCGGTCGGCTATATTGACTACAGAACATGAAGCTGGACTTGTCAGAAGAATCATACGTTTGGCTGATGTTGGAGCGCCGATGACTTCAAAAATGTTGCGCGGACAGGCTTTTTCATTctgtaaaattaagaaaattcctAACACTTTTAATGATGCTACAAATGCTGCGGGGAAAAAATGGTTGAGGTTATTTCTCAAACGACACCCTGAGTTAGCACGTCGTAAAGCACAGATGATGAATCCAGCTCGTgctcaaaaattaaataaagatattgttgGCGATCACTTTTCCAAATACAAAAGCGTGCTAGATAGACTGGCAATTGAACATAAACCTGAAACCATTTACAACATCGATGAAAAAAATTGA
- Protein Sequence
- MAANVCRKPAVENNHDAKRTLVFIKFWQNKHNIMESGSPASTTRKRRAQWASQQTENAVKMVERGILSTYAAAARYNIPRRTLRNHLKSGSTTRKLGRSAILTTEHEAGLVRRIIRLADVGAPMTSKMLRGQAFSFCKIKKIPNTFNDATNAAGKKWLRLFLKRHPELARRKAQMMNPARAQKLNKDIVGDHFSKYKSVLDRLAIEHKPETIYNIDEKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531943; iTF_00363956; iTF_01280163; iTF_01546587; iTF_00771830;
- 90% Identity
- -
- 80% Identity
- -