Dmel030375.1
Basic Information
- Insect
- Danaus melanippus
- Gene Symbol
- -
- Assembly
- GCA_010014825.1
- Location
- JAAAKD010022559.1:326-874[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-11 1.4e-07 32.8 0.0 1 38 22 59 22 63 0.93 2 2 9.6 1.9e+04 -2.8 0.1 1 13 140 152 140 154 0.77
Sequence Information
- Coding Sequence
- atgaaaaagaaatcaacaaaaaagagtcaaaaggaattaaaaaaaagtaaacgaAAACAATATactgaagaaaatataaaaaaagctttacaCGCGATTAAAAATGGCATGGCCAAAAAACAAGCTGCGAAACTATATCAAGTTCCTCGAGCCACGTTGcaatttcgtataaaaaatcCAAACCATAAACCTCAACCTGGTCCGAGTCCAGTGCTGAACGCTGACGAAGAGAATAAACTGAAGAATTGGTTAAATGTAAGCCATACAAAGGGCTTTCCTAAAAGAAAGGAAGATCTATTATATAGCGTatcagaatttataaaaaaaagcggTCGACCTAACCCGTTCAGAAATAACATTCCCCGAGAGAAATGGTACCAACTCTTTTTAAAGAGACACCCAGACATTGCTGTAAAAACTCCTGAAGCAGTAACGGCGGCAAGTGCTGCCGTATCAGAAAACGATTTAAAAGGATGGTTTGGAGCAATTGAGAGATACATAAAGATCACAGTTTGTTTGAAGTTTTATAAGACCCGAAAAGAGTTTTAA
- Protein Sequence
- MKKKSTKKSQKELKKSKRKQYTEENIKKALHAIKNGMAKKQAAKLYQVPRATLQFRIKNPNHKPQPGPSPVLNADEENKLKNWLNVSHTKGFPKRKEDLLYSVSEFIKKSGRPNPFRNNIPREKWYQLFLKRHPDIAVKTPEAVTAASAAVSENDLKGWFGAIERYIKITVCLKFYKTRKEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -