Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.5e-05 0.81 10.5 12.0 1 19 28 50 28 50 0.88

2 10 0.8 1.2e+04 -2.8 1.7 6 10 80 84 80 84 0.95

3 10 0.055 8.1e+02 0.9 11.2 1 12 90 101 90 101 0.93

4 10 0.014 2.1e+02 2.7 0.6 4 10 105 111 104 111 0.92

5 10 8.6e-07 0.013 16.2 14.0 3 19 119 135 117 135 0.92

6 10 0.56 8.3e+03 -2.4 0.5 6 10 164 168 163 169 0.70

7 10 0.0089 1.3e+02 3.4 17.2 1 18 174 190 174 191 0.81

8 10 1.4 2.1e+04 -3.6 0.8 15 18 217 221 216 222 0.54

9 10 6.9e-09 0.0001 22.9 11.5 1 18 227 246 227 251 0.87

10 10 0.0061 90 3.9 12.4 1 19 257 280 257 280 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.5e-05	0.81	10.5	12.0	1	19	28	50	28	50	0.88
2	10	0.8	1.2e+04	-2.8	1.7	6	10	80	84	80	84	0.95
3	10	0.055	8.1e+02	0.9	11.2	1	12	90	101	90	101	0.93
4	10	0.014	2.1e+02	2.7	0.6	4	10	105	111	104	111	0.92
5	10	8.6e-07	0.013	16.2	14.0	3	19	119	135	117	135	0.92
6	10	0.56	8.3e+03	-2.4	0.5	6	10	164	168	163	169	0.70
7	10	0.0089	1.3e+02	3.4	17.2	1	18	174	190	174	191	0.81
8	10	1.4	2.1e+04	-3.6	0.8	15	18	217	221	216	222	0.54
9	10	6.9e-09	0.0001	22.9	11.5	1	18	227	246	227	251	0.87
10	10	0.0061	90	3.9	12.4	1	19	257	280	257	280	0.85

Coding Sequence: ATGTCGATCAATAAAGATCAACGTAAGACTTGCACAGATCCCATACCGCTCTGTGGTAACATCTGTGCTAAACCTCTACCGTGCGGACCGGCCGGCGACAAGCATATATGTAAAGAAAGCTGCCACGAAGgtGGTTGCCGCATCTGTCCCGACACAACCCTGCTGCAGTGCCGCTGCGGTCATTCTAGCAAAGAGGTGCCGTGTGCTGATCTGCCGCAGATGATCAACAACGTGTTGTGTCAGAGAAAATGTAACAAGAAGTTATCATGCGGCCGTCACCGTTGCCACACCCGCTGCTGTGACTCAGCCTCTCACCGCTGCGCCGTGGTCTGCGGCCGTTCCCTCTCGTGTCAGCTCCATAGGTGTGAGGAGTTCTGTCACACCGGACACTGCGCGCCCTGTCCGAGAGTCAgTTTCGACGAGCTCCGTTGTGAATGTGGCGCGGAGGTGTTGTTGCCGCCGGTCCGCTGCGGCACCAAGCCTCCAGCCTGCAGCGCCCCATGCCGCAGGAGCAGACCCTGCGGTCACCCGCCACACCACTCCTGCCACTCCGGCGATTGCCCGCCATGCGTTGTCCTTACAACTAAAATGTGTTACGGAAAACATGAAgAACGGAAAACAATACCGTGTTCTCAAGAAGAGTTCTCCTGCGGCCTGCCGTGCGGGAAACCTCTTCCTTGCGGTAAACACACTTGTATCAAAATATGTCACAAGGGATCTTGTGATGTAAGCACatgtaCTCAACCTTGTACATCCAAACGGCCGAGTTGCGGTCACCCGTGTGCGGCGAGGTGTCACTCTAGCGGCGGAGGCTCCTGTCCCAGTGCGGCGCCCTGTCGCCGGCCAGTACGAGCCACTTGCCAATGCGGACGAAAACAAACAGAGCGAGCCTGCTGCGATAACGCCAGGGACTATGCCAACCTTTCCAAACTGGACGCTGCAGGCGTAGTGGCGGTAACAGACCGAGCCAAAAGAGGGATGTTGGGTGAAGGCCTGTTGGATgacttgtaa
Protein Sequence: MSINKDQRKTCTDPIPLCGNICAKPLPCGPAGDKHICKESCHEGGCRICPDTTLLQCRCGHSSKEVPCADLPQMINNVLCQRKCNKKLSCGRHRCHTRCCDSASHRCAVVCGRSLSCQLHRCEEFCHTGHCAPCPRVSFDELRCECGAEVLLPPVRCGTKPPACSAPCRRSRPCGHPPHHSCHSGDCPPCVVLTTKMCYGKHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKICHKGSCDVSTCTQPCTSKRPSCGHPCAARCHSSGGGSCPSAAPCRRPVRATCQCGRKQTERACCDNARDYANLSKLDAAGVVAVTDRAKRGMLGEGLLDDL

Sequence clustering based on sequence similarity using MMseqs2