Basic Information

Insect: Danaus chrysippus
Gene Symbol: -
Assembly: GCA_004959915.1
Location: RPCZ01000016.1:1815987-1817051[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0021 0.15 12.8 0.4 1 23 62 85 62 85 0.98

2 9 0.001 0.075 13.7 1.7 2 23 113 135 112 135 0.93

3 9 0.009 0.65 10.8 1.4 2 23 157 178 156 178 0.97

4 9 0.0004 0.029 15.0 1.2 1 23 182 205 182 205 0.95

5 9 0.53 39 5.2 0.4 2 14 209 221 208 226 0.75

6 9 0.032 2.3 9.0 0.5 1 20 241 260 241 264 0.77

7 9 0.00059 0.043 14.5 4.1 1 23 271 294 271 294 0.96

8 9 7.6e-05 0.0055 17.3 2.2 1 23 300 322 300 322 0.97

9 9 0.00013 0.0093 16.6 2.5 1 23 328 351 328 351 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0021	0.15	12.8	0.4	1	23	62	85	62	85	0.98
2	9	0.001	0.075	13.7	1.7	2	23	113	135	112	135	0.93
3	9	0.009	0.65	10.8	1.4	2	23	157	178	156	178	0.97
4	9	0.0004	0.029	15.0	1.2	1	23	182	205	182	205	0.95
5	9	0.53	39	5.2	0.4	2	14	209	221	208	226	0.75
6	9	0.032	2.3	9.0	0.5	1	20	241	260	241	264	0.77
7	9	0.00059	0.043	14.5	4.1	1	23	271	294	271	294	0.96
8	9	7.6e-05	0.0055	17.3	2.2	1	23	300	322	300	322	0.97
9	9	0.00013	0.0093	16.6	2.5	1	23	328	351	328	351	0.97

Sequence Information

Coding Sequence: ATGACCTGCTATGTTACTCATCAAAAAATTACATctgtattacaatttattatagattCCGACACTGATAAGGATTGGGCGAAAATAGCTGAAAGACGCGGTCGTGGGCCACTACTGAGGGACAATTCGATTAAAATCCTCCAAAACTCAACAATGTTCGTATTCCAATGGCACAAAAGTAGATTCACATGTTTCCTTTGCAAGGCACCCTTCATTGATATACAATCATTGAGAGATCACACGAAAACAGAACACGACGGCTTAGAGAAAtgtaaaatagaaaagaaGATTATAGCgcagcaaaataaattactgaaaGTTGAAATATCTATATTGAAATGTAAGCAGTGCGATGGGGACTTTAAAACGCTGTCTGATTTTCGCCACCATTTGGAGGAAGAGCacgaagttaaatttaaagaggGAGGCGATTTGCTTGTGCCTTTCAAGTTAGAGAGCGAAGGTCTAAAATGCCAGACGTGCAGAGAAAGTTTCACATTATTCAGGCTCCTTAGCATCCACGTCAACAAACATTACCAGAACCACGTATGCCACGTCTGCGGAGCTGGTTTCACAAGCCTGGTGCTGCTAAACCTGCACAGAACGAGATCACACAGACTGATAAAATGCAATGACTGCAATTTAACATTTCTGAATCGCAAGGACAAAAAATTACACGACATAGACCATCACAACATGAGGTTCGAACGGAAACTCAGATTCCTGTGTCCGTACTGCGATGAGAGGTTCTTCCAAGAAAACCTCAAAATACAACACTTAGTTGACAAACACGGCGTCGAAAAACCCCAGCACAGATGCAATTTATGCGACAAAGTCTTCATAACCAGAAGCCTTTGTAATAATCACATCAAGAATGTGCACAAAAAGGAAAAGAAACATGTGTGCGATGTATgcaataaactattttacacAAAATCCGATGTACAAAGACATAGAGTTACCCACACAGGCGAGAAGAAATTCACTTGCACCCTCTGCAATAATTTATTCGCAACTAAAGATTCATTACGACGACACACGAAAAGAACCCATGttgagaattaa
Protein Sequence: MTCYVTHQKITSVLQFIIDSDTDKDWAKIAERRGRGPLLRDNSIKILQNSTMFVFQWHKSRFTCFLCKAPFIDIQSLRDHTKTEHDGLEKCKIEKKIIAQQNKLLKVEISILKCKQCDGDFKTLSDFRHHLEEEHEVKFKEGGDLLVPFKLESEGLKCQTCRESFTLFRLLSIHVNKHYQNHVCHVCGAGFTSLVLLNLHRTRSHRLIKCNDCNLTFLNRKDKKLHDIDHHNMRFERKLRFLCPYCDERFFQENLKIQHLVDKHGVEKPQHRCNLCDKVFITRSLCNNHIKNVHKKEKKHVCDVCNKLFYTKSDVQRHRVTHTGEKKFTCTLCNNLFATKDSLRRHTKRTHVEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00420086;
90% Identity: iTF_00420796;
80% Identity: -