Basic Information

Insect: Danaus chrysippus
Gene Symbol: -
Assembly: GCA_004959915.1
Location: RPCZ01000100.1:670410-681392[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00043 0.031 14.9 0.4 1 21 156 176 156 177 0.94

2 10 0.14 9.8 7.1 1.0 3 23 228 248 227 248 0.97

3 10 0.00072 0.052 14.2 2.6 3 23 285 305 284 305 0.98

4 10 0.0085 0.62 10.8 1.1 1 23 312 334 312 334 0.92

5 10 4.2e-06 0.00031 21.2 0.2 1 23 340 363 340 363 0.95

6 10 0.0077 0.56 11.0 2.9 2 21 370 389 369 390 0.94

7 10 0.052 3.8 8.4 0.8 1 23 397 419 397 419 0.94

8 10 2.3e-05 0.0016 18.9 0.3 1 23 425 447 425 447 0.99

9 10 2.4e-06 0.00017 22.0 1.2 1 23 453 475 453 475 0.97

10 10 0.017 1.2 9.9 4.9 1 23 481 503 481 503 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00043	0.031	14.9	0.4	1	21	156	176	156	177	0.94
2	10	0.14	9.8	7.1	1.0	3	23	228	248	227	248	0.97
3	10	0.00072	0.052	14.2	2.6	3	23	285	305	284	305	0.98
4	10	0.0085	0.62	10.8	1.1	1	23	312	334	312	334	0.92
5	10	4.2e-06	0.00031	21.2	0.2	1	23	340	363	340	363	0.95
6	10	0.0077	0.56	11.0	2.9	2	21	370	389	369	390	0.94
7	10	0.052	3.8	8.4	0.8	1	23	397	419	397	419	0.94
8	10	2.3e-05	0.0016	18.9	0.3	1	23	425	447	425	447	0.99
9	10	2.4e-06	0.00017	22.0	1.2	1	23	453	475	453	475	0.97
10	10	0.017	1.2	9.9	4.9	1	23	481	503	481	503	0.95

Sequence Information

Coding Sequence: atgtCGACTGAAATGAAAAGTAACTCGTGTAGAATATGTTTAACTATAGATGTCGGAGGGGTGAAACTTGACAAAAACCCAGaaatgcttaaaatattagaattctGCGTTGATTTTGctGTAGATCTTACGTTTGCTCCGAAAATAATATGCAAGAAATGTGTTGAAGAAGTAGATAAATTTGCAAAGTTTAAACATAAGTGTATAGAATCTGAAGAGCTATGGAAATctgttaatAAACATAATAATGAGATTGAATGTAACATTACAAATactataaaagaaactaaatattttgaagacaatgatgaaaaatattgcGAAGACACTGATGGCATAAAGCAGTCAAAAATCGAAGATTCCATATCTGTAATAGTTCCTAGGATTGTTGAAGATTTTAAATCATACAGCGGAAATAAAAGTACAAAGGAAATCGAGAAATATTCcagtttaaacaaaaagaaatatgtctgtagcaaatgtaataaagaatataGTAGTAGTAAATGGTTACTCATACATAAAATGAATGTctgttataaagataaatataaggaTGACATGTTAAAGAATGTGGAAAAAGATCATGATGACTCAAGACAGTATTGTGGTTTATGTCAAACATCTTTGAGCGATATAAAAAGTCATTTGGATGAACACTGGCACAACAATGACTTGTTAtgcaaaatatgtaattatactGGCAGGGATTTCGCTGATATGATAACACACAGACATATACACTGCAAGAAAACGAAATTATATTGTCATGCTTGCAATAAAAAGAAGGCGTCCATGTTGTCTCTTCAGTTCCATTTTAGATCCGTACATTTGCACAAAACAGGAGGTTTATGTTCCATTTGCAGTAAAACTTTCACAAAATTCAAAACTTGGAAGAAGCACGTACGGCTGCATAATGAAGAAAACAGTCTGTTCATTTGCGATATTTGTGGAAAGAAATTTTTGTACCGACATGAAATCAAATCACATCTTATTGATCATTCGAATGTGAGACAGTTCGTTTGTGAAATGTGtggaaaagattttaaaagaatgtCCGCTCTGAAAgaACACATTGCAAATATGCACTTCCCAAATGCTCCCGTGGAATGCAGCCATTGCAAACGAACCTACAAAAGTCATATTAAACTGAACctacatttgaaaaaaattgtcaaaGACAAGTTATTTGTATGTGAAGTGTGctctaaaagatttttaaccgaaaatatattgaaaaagcaTATGTTTTGGCACACTGGAGAGCGGCCCTACACTTGTGAAGTTTGCGGATCCAAGTATAAAGCGAAGGGGCAATTGAACTTGCATATGAGGATCCACACTGGCTTTATGCCCCACAAATGTCCAGATTGCGGGAAAGGTTTTCCAACTGGAAAACAGTTGAAACGACACAAAAGTGTGCATACAGGGATACGGGCTCACAAGTGTGAACACTGTGAACGTTCTTTTCATGAAAAGAAAGCACTGGCAGAACATagtatgttacataaaaatattgaaaatgtcaaaCTGGAGACTTAG
Protein Sequence: MSTEMKSNSCRICLTIDVGGVKLDKNPEMLKILEFCVDFAVDLTFAPKIICKKCVEEVDKFAKFKHKCIESEELWKSVNKHNNEIECNITNTIKETKYFEDNDEKYCEDTDGIKQSKIEDSISVIVPRIVEDFKSYSGNKSTKEIEKYSSLNKKKYVCSKCNKEYSSSKWLLIHKMNVCYKDKYKDDMLKNVEKDHDDSRQYCGLCQTSLSDIKSHLDEHWHNNDLLCKICNYTGRDFADMITHRHIHCKKTKLYCHACNKKKASMLSLQFHFRSVHLHKTGGLCSICSKTFTKFKTWKKHVRLHNEENSLFICDICGKKFLYRHEIKSHLIDHSNVRQFVCEMCGKDFKRMSALKEHIANMHFPNAPVECSHCKRTYKSHIKLNLHLKKIVKDKLFVCEVCSKRFLTENILKKHMFWHTGERPYTCEVCGSKYKAKGQLNLHMRIHTGFMPHKCPDCGKGFPTGKQLKRHKSVHTGIRAHKCEHCERSFHEKKALAEHSMLHKNIENVKLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00421663;
90% Identity: -
80% Identity: -