Basic Information

Insect: Danaus chrysippus
Gene Symbol: -
Assembly: GCA_004959915.1
Location: RPCZ01000183.1:362651-370899[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0036 0.26 12.0 3.1 1 23 288 310 288 310 0.98

2 10 0.064 4.6 8.1 0.5 2 23 318 339 317 339 0.88

3 10 0.16 12 6.8 1.9 1 23 343 365 343 365 0.97

4 10 0.0011 0.079 13.6 0.4 2 21 381 400 381 405 0.92

5 10 0.13 9.3 7.1 0.0 3 17 415 429 415 429 0.93

6 10 9.8 7.1e+02 1.2 0.1 6 23 430 448 429 448 0.93

7 10 7.5e-07 5.5e-05 23.6 1.3 1 23 459 481 459 481 0.98

8 10 1.4e-06 0.0001 22.8 4.0 1 23 487 509 487 509 0.99

9 10 0.00081 0.059 14.1 1.9 1 23 515 537 515 537 0.98

10 10 1.5e-05 0.0011 19.5 0.2 1 23 543 566 543 566 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0036	0.26	12.0	3.1	1	23	288	310	288	310	0.98
2	10	0.064	4.6	8.1	0.5	2	23	318	339	317	339	0.88
3	10	0.16	12	6.8	1.9	1	23	343	365	343	365	0.97
4	10	0.0011	0.079	13.6	0.4	2	21	381	400	381	405	0.92
5	10	0.13	9.3	7.1	0.0	3	17	415	429	415	429	0.93
6	10	9.8	7.1e+02	1.2	0.1	6	23	430	448	429	448	0.93
7	10	7.5e-07	5.5e-05	23.6	1.3	1	23	459	481	459	481	0.98
8	10	1.4e-06	0.0001	22.8	4.0	1	23	487	509	487	509	0.99
9	10	0.00081	0.059	14.1	1.9	1	23	515	537	515	537	0.98
10	10	1.5e-05	0.0011	19.5	0.2	1	23	543	566	543	566	0.98

Sequence Information

Coding Sequence: ATGGAAGAACTTAAAGTGTGTAGAATATGTCTTGTGATGGATGTTAAAATGCACGATCTTTGTTCGAATCCCCTTgatgtttattatgaaaatgttattgGTGGCAATgtGTTGAAAATGGTGCAACTAAGGGGATATGCATGTTATATGTGTGCACCAATGCTAAGAAAATTTCATTCCTTCAGAGAGAGATGTCTCAAAGGACAAACAGAACTGTATGGTTTACTGAACTCTTTTGGAAAGATTTCCAGAGACGGCATTATACAACTACATAAACAAAACCAAAGTTCCtcttatttagaaaatataaaattatacaacataGTCATTGACACCAACGAAGATGATGCCGGAATGAAAATAGAACCAACGGAAATATATCAAAgtagaatatataatgttgAGAGTGGTATGAAAGAAATTGACCATGAGAGGTTCAAGCAAGAAGTAACACATCAAGAAAGGATTTCGTTTAATATCATAGAAGATATTAAGCAAGAAGaagaattttatgattataacgGAATATCGAGTGACGATGACGAACCGTTGTCTGttcataaagaaaagaaagaagACGGCAAGAACAGAAGTAGAATAGATGACAAAATAGAATTAGAAGTTGACGctgaaGCAAATGCTAATACAGTTTTGCAAGAATTATGTGGTATTATAACTAAGAAGAAGAGGGGTAGGCCTAAGAAGGGTGAGGTTAGAAAGAAGATTGTTAAGAGAAGTAAACATAGTCAACACATAGCGTTATTGGAGAATGACGGACTTGATGTAGAAGATTATTGCAATATAATTACACTcactGAAGTTATTCAGCGGCAGCAGTCTCTTAACTATATTAATTCTGTGtacaaatgtaatttatgttacaaaGGATTTGTTGATACTCACGCTTGGAAACACCACGTCGCAAAACACGAACCGaGCGCCGGTGATTTAGagtgtaatatatgtaagatGCGATTCAAAACAATAAGGATATTGAAGAAGCACGCCGGCAACCACGGAAAGAGGTTCTCATGTAAATCATGTTCATACGTTTCTAAGAACACAACTCAAGCCAAGCAGCATCAACAGTGGCATAAAGGTgaGACGGATAACGTAGGTGATGATGATAAAGACTCTCCGTATTGTGAACAGTGTGACGTTAAGTTCACTTCTCTGGAGGCATACAAGAGACATATGGTGACTTCGGTCAAACATACGCAGAGTACTGACTTCGGtaACGGTTGTCGTGAATGCGGCGAGACGTTCCCTGATTCAGAGGCGCTTCGATGTACGGAGGTGATCCGCAGCGCCCGCGAGTACTGGTCACACTTCAGACGAGTACATCCTGATAAGACGTATCCCACGCAGAAAGACTTTGTGTGTGACGTGTGTGGAAAGAGCTTTAGGAGCAACGCCTTCCTAAACTATCACAAGCGGACTCACTCGTCTGAGCGTTCGTACAAGTGCAGCCAGTGTCCTAAAGCGTTTCACAACAGAAATAATCTTCAGATGCACCAACGAACACACTCCGACGAGCGACCCTACCCGTGTGCCTTGTGTGACAAAGCATTCAAATGCAAGAGCGCTCTAGATAGACACTTCCGGagTCACAGCGGCGAGAAGCCATACGTATGTCAGGTGTGCGGGAAGGCGTTCGCTCAGTCAAACAGTCGCAAGCTGCATGTAAGGACGGTACACCTCAAACAGTCAGCGCCGTACGTGTCGCGCGCGAGGCTCGAGAGGAGGACCCGCCCTAACAAGGAACACGCGCCCGCCTCGCATTTGTTCTACTGA
Protein Sequence: MEELKVCRICLVMDVKMHDLCSNPLDVYYENVIGGNVLKMVQLRGYACYMCAPMLRKFHSFRERCLKGQTELYGLLNSFGKISRDGIIQLHKQNQSSSYLENIKLYNIVIDTNEDDAGMKIEPTEIYQSRIYNVESGMKEIDHERFKQEVTHQERISFNIIEDIKQEEEFYDYNGISSDDDEPLSVHKEKKEDGKNRSRIDDKIELEVDAEANANTVLQELCGIITKKKRGRPKKGEVRKKIVKRSKHSQHIALLENDGLDVEDYCNIITLTEVIQRQQSLNYINSVYKCNLCYKGFVDTHAWKHHVAKHEPSAGDLECNICKMRFKTIRILKKHAGNHGKRFSCKSCSYVSKNTTQAKQHQQWHKGETDNVGDDDKDSPYCEQCDVKFTSLEAYKRHMVTSVKHTQSTDFGNGCRECGETFPDSEALRCTEVIRSAREYWSHFRRVHPDKTYPTQKDFVCDVCGKSFRSNAFLNYHKRTHSSERSYKCSQCPKAFHNRNNLQMHQRTHSDERPYPCALCDKAFKCKSALDRHFRSHSGEKPYVCQVCGKAFAQSNSRKLHVRTVHLKQSAPYVSRARLERRTRPNKEHAPASHLFY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -