Dchr003876.1
Basic Information
- Insect
- Danaus chrysippus
- Gene Symbol
- -
- Assembly
- GCA_004959915.1
- Location
- RPCZ01000027.1:489630-503999[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.5 6.2e+02 1.4 0.1 3 16 284 297 283 298 0.85 2 18 0.44 32 5.5 0.1 2 23 456 477 455 477 0.89 3 18 0.00056 0.04 14.6 0.1 1 23 487 510 487 510 0.96 4 18 0.17 12 6.8 2.9 1 21 612 632 612 633 0.93 5 18 0.032 2.3 9.1 3.8 2 23 694 715 693 715 0.95 6 18 4.1 3e+02 2.4 0.8 1 23 727 751 727 751 0.88 7 18 7.8e-05 0.0056 17.3 0.7 2 23 758 781 757 781 0.97 8 18 0.062 4.5 8.1 0.2 1 23 787 809 787 809 0.93 9 18 0.0019 0.14 12.9 3.3 1 23 815 837 815 837 0.98 10 18 0.19 14 6.6 0.1 2 19 848 865 847 868 0.88 11 18 0.063 4.6 8.1 0.1 1 23 948 970 948 970 0.96 12 18 1.8 1.3e+02 3.5 7.2 1 23 977 999 977 999 0.95 13 18 0.0012 0.089 13.5 1.8 1 23 1033 1056 1033 1056 0.95 14 18 0.0035 0.25 12.1 0.7 1 23 1063 1086 1063 1086 0.97 15 18 0.11 8 7.3 1.9 2 23 1122 1144 1121 1144 0.95 16 18 0.00055 0.04 14.6 0.8 1 23 1150 1172 1150 1172 0.96 17 18 8.2e-05 0.0059 17.2 0.1 1 23 1178 1200 1178 1200 0.98 18 18 0.00041 0.029 15.0 0.9 3 23 1208 1229 1206 1229 0.94
Sequence Information
- Coding Sequence
- ATGATGGAACCGCAATCACCTTTGATTCTTTGCATGGAAAATGTTGAAGGACAGGAAGTGGCCCTCAAAATAGAGCCCAATGATACATTTCAGATGTTTCTCGATAATTCTAAGTTACTACTAGGTTTCGACGTTGATATAAACTCTATAACTGGCAACCAGACAGTATCTCTTAGTGACAACATCTATACATTCCTGGTTAACGCTGAAAAGAACGTAACTAGTAATGATCTTGATCAGATTCTGGATCAAAACCCTGAGAATGACGATCTGGTGTATGTTCTTGATGACGGTACCCAAATAAGGGCGTCGCAGATACAATTTGACAATGAGGACCCCTTAATAGATCTGACAGCTGAAAAAATACCATTCGTGAAATACAACGATGATGAAGATGAAGATGTTGTGGAAATCGGGACAGTTAAAGATGTCAATATCATCGAAAGTCCTGTTACCAAGTGGAATAAGGACTGCAGTCCGAAATGCAGTTTCGCAAACAGCCTGCCTTTCAAACTCGTATGCAATAACACTTCAAACTTCGACGCCCAATTCTCGAAATATCTAGAACCTACCAAAACATACACGACCCTGAATCCTGCAAATCGCAATAAATCACCAAGAAGCCTTATACGggataattataagaattatgaTGAAAGAAACGATTTCTTTACTAGGGAAGATATTTTGAACATGTTCAAAGATTCTCCAGTAACTTCCTTGCCATATGATGGTCAGAATTACGAGAAGCGTAGGCATGTGAGGAAAACTGACCCTTCTAGATCAGTACAAAAGAGCTGGAATTACAAAACAACACCAGACGTCGACAATATGACTAATAACCAAGATTGCTTCATATGTGGGAAGATTGTTGAAAACAATGAGAAGCTATATCTATTCGATAAAGAAGATCAAATGTTGCATAGATGTGAGCAAAGGAAATTTCAGCAGCAATTGAAAATCATCTGCGAAAGATGTCtgaatgaaaatttcaaaCCAAGCAGAATGAAAAGTCCAAGCCAGTCGCTCAACAACGACGAATATCTAGTCATAAAGAATAACCAACAGTACATATTCCAAAAAATTACATCCATAGACCTAAAGAAGTTAAATGTAGACTCGAACAAAAATTCTGAGTACGTCAAAGTCGAAATAGGTCCCGATGGAGAAATTATCACAAAACCTATAGACAACGATGTTAATGACGTCATGGTAGTTAAAGATGAGAAGAAGGAAAGTTCTAGTGACGTTGAAATTATAGAACCGGATGTTGAGATTGACATAGACAATATAGAGGAAGCGGATGAACAGGTGAAGGAGTTTTTGGGGAAGTACCAGTGTGATGCCACAGATAATAAAGAATTGAAATGCAGGTTTTGCGAGCGCGTTTTCACAGAACTGGAACAAGTCATAGAGCATGGAGAGGAGCATAGACACGATGTAGAAGATGAAACAGTATACCCATGTCCGTTATGTGACTACgGATATGCAAACTTCAAATATCTCAAAGCTCACCTAAAAGCCGcgcatattaataataaagataataataatgaagaacATAATgATAAAAATACACCCAAATCATCTCCAGTAGCGAAAAGAACAAGAAGCGCTATAAAGAAACACGACAACGAAAATGATgataaaaacgAAAAGAACGCCGAAGAGACGAAGACTAATAATACGGAATTCACTACTGAGGTTAAACAAGAATGTGTTGAGAGTAGTGACGAGTCTATATGGATCGTGCAAActggtgatgatgatgaacaACTGAACAACTTGCTGCAGGTAAAAGATGAGGAACGGGACATGAATGATAGAAAGAAACACAAGTGTTTCAACTGCAGCCAAATATTTCCCACCGCGGAGAGTTTATCGTCACATAAATGTAGGAAACGAGGCAGAAAAAGGAAATCGTTGTTGAAGGACGAATCAGTTATATTTGTTCCATCAGAAGAAGATTTTTTGAAGAGAGCCCAAGGTAGATTACGGCGTGAAGGATCAGGAAATAATGACCTATTAGTAATGagATCACGCAAGAAGAAGAATCGTGATTCTGAGCCGCAGATCGTCACTTGTCATAATTGCAACGAATCCTTCACGTCCAAAGTGAGACTTAAATTTCATATGCAATTCCACGACACAACAAATCTATTGACATCCGACGGTCGCTACGTGTGTTCTGAATGCGAGAACGCTAAATTCGCTACAGAGACAGAGTTATTCGATCACGTACATTTCCAACACGACAAGCAAAAACGATGGCAATGCCCCGTCAAAGATTGCGGGAAGACATTCTTCTTGAGGGCAACACTAACCAAACACAGTcgcacacacacagacacgaGGAGGTATGTGTGTGTGACGTGTGGTAAACGTTTCTTGGACAAACAGACGTTGGATGAACACGGCGTTACTCATTTACagATAAAGCCATTCCAATGTCACATATGTCTTAAGCAATTAACCCGTCGCTCACGTCTTCGTATGCACTTACGAGCCCACGAGGAAGAATTATCACCAGCACTAGTATTGGTTTGCGCGATATGTAATAGAGCGTTTAGGGATCACGTGGACGCACAGGAGCATGCTACGAAATCGTCAGAATGTATTGAAGAGTTCACAAATGAACTGAAAGAGGAGAAGGAGGCTTCAGAACAATTATCTCCTACCAGTGGACTAGTGAGACATACTGTTCACttttatattgtagCAGAATATTCACATAATAAGGCGATCGATCGTGAAGTGAACAACGCTGAGAGCGAGGCGCTACTATCCTCTTTAGATGACGTTGCTAAAAATATCATACGAGTGGTCATCATTGAGAAGGCGTTCAGATGCGAGTATTGTGAAGATGTATTCTATTTGGAAGATGCTTTAAATAATCACAGAGTAATACACAAGGGTGTGCAGAATCCGTTTACCTGTCACATTTGTAAAGTCAGTTTCGCTACATATTCAAGatGCACAACACACAAAACCACACACGGTTTTTACAAGCGAAGTACTACAGAGGGTAACGAGGGCCACACTGGACCGGCTAGCGCGGGGATTTTAGGGTACGGGGGATTCCCAGTTGTTAAACACTTCCTATGCGAGGACTGCGGAAGATCGTATTTGCATTGGACATATTTACAAGTACATCGTCGAATGAAACACGCTAAcgagaattatatatttaaatgtaaccaGTGCGAACTGACATTCCCaaatagTTGGAGTGTTGCGTATCACAGGAAGAAAGTACACGGAAAATCTGGCCAAGACGAGAATGGGGGCAtcactaaaattataagagaCAACAGAATCCCATGTCgtAACTGGTCCGACCAAATAGATGAATCCAGTACCACTGTATGCAGCAAGTGTGGACACAACCTGCATAACGTGACGGCACTACAAAAACATATCaaGGAGGTCCACGGGTACACCAACCCCCACTCGTGCCCCGTGTGTGGTCGTAGTTTCCGTTCAGCGTCCATACGTAACGAACACGTAAGGACTCACACGGGGGAACGACCGTACCCCTGTGATGTGTGTGGGGTAGCGTTTAGACGATCAACAGCGATGCGTAATCACCGTCTAATTCACACGGGGGTCCGCGCGTGGGCTTGTCTGAGATGCCCCAAGAGGTTCCGTATTAAATCTGACCTCAAGACACACCTGAGATTAAAACATCCCGCTCATCTGGCTGTTATTgagatcgAGGGTACCGCAGCATCTTCGGAGGAGGTGCAACAACAGCTGACCTTGAACAACATCAACCACGACAAGGTCATTGAGATAACGATGATAACCTTCGCTAAGGATACAACGAATATAGTTCCTAATTCATCGCGGGCTCTCGGTCTATTAAATGATGTGCCAAGGACACGCGTGGTTTGGGAAAGACCTACGCAATACtatgatgttTTCCAACCCCGTCGCGGCAGAGGTATAGCTAAGACCCCGAGACGACCTAAAATATTACGAGGGGAAGATTTACCCCATGATGAAAATTACCCTTTGGATAATGAAAACACGGAAACGGAGACTGATAAGATTCAAGATAATATGTATCCTGTGACTTTGAATGTTGATGGAgagTTTCAAAACCTATCAACGTTGAATGTACAACTTTTGTTACAAGATGGCGCTTTAGTGAACGGCAATCAAATGGTCGAATTACAATTAAACGATGAAATGCTTCTGGAATAG
- Protein Sequence
- MMEPQSPLILCMENVEGQEVALKIEPNDTFQMFLDNSKLLLGFDVDINSITGNQTVSLSDNIYTFLVNAEKNVTSNDLDQILDQNPENDDLVYVLDDGTQIRASQIQFDNEDPLIDLTAEKIPFVKYNDDEDEDVVEIGTVKDVNIIESPVTKWNKDCSPKCSFANSLPFKLVCNNTSNFDAQFSKYLEPTKTYTTLNPANRNKSPRSLIRDNYKNYDERNDFFTREDILNMFKDSPVTSLPYDGQNYEKRRHVRKTDPSRSVQKSWNYKTTPDVDNMTNNQDCFICGKIVENNEKLYLFDKEDQMLHRCEQRKFQQQLKIICERCLNENFKPSRMKSPSQSLNNDEYLVIKNNQQYIFQKITSIDLKKLNVDSNKNSEYVKVEIGPDGEIITKPIDNDVNDVMVVKDEKKESSSDVEIIEPDVEIDIDNIEEADEQVKEFLGKYQCDATDNKELKCRFCERVFTELEQVIEHGEEHRHDVEDETVYPCPLCDYGYANFKYLKAHLKAAHINNKDNNNEEHNDKNTPKSSPVAKRTRSAIKKHDNENDDKNEKNAEETKTNNTEFTTEVKQECVESSDESIWIVQTGDDDEQLNNLLQVKDEERDMNDRKKHKCFNCSQIFPTAESLSSHKCRKRGRKRKSLLKDESVIFVPSEEDFLKRAQGRLRREGSGNNDLLVMRSRKKKNRDSEPQIVTCHNCNESFTSKVRLKFHMQFHDTTNLLTSDGRYVCSECENAKFATETELFDHVHFQHDKQKRWQCPVKDCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELSPALVLVCAICNRAFRDHVDAQEHATKSSECIEEFTNELKEEKEASEQLSPTSGLVRHTVHFYIVAEYSHNKAIDREVNNAESEALLSSLDDVAKNIIRVVIIEKAFRCEYCEDVFYLEDALNNHRVIHKGVQNPFTCHICKVSFATYSRCTTHKTTHGFYKRSTTEGNEGHTGPASAGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENYIFKCNQCELTFPNSWSVAYHRKKVHGKSGQDENGGITKIIRDNRIPCRNWSDQIDESSTTVCSKCGHNLHNVTALQKHIKEVHGYTNPHSCPVCGRSFRSASIRNEHVRTHTGERPYPCDVCGVAFRRSTAMRNHRLIHTGVRAWACLRCPKRFRIKSDLKTHLRLKHPAHLAVIEIEGTAASSEEVQQQLTLNNINHDKVIEITMITFAKDTTNIVPNSSRALGLLNDVPRTRVVWERPTQYYDVFQPRRGRGIAKTPRRPKILRGEDLPHDENYPLDNENTETETDKIQDNMYPVTLNVDGEFQNLSTLNVQLLLQDGALVNGNQMVELQLNDEMLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00959621;
- 90% Identity
- -
- 80% Identity
- -