Dchr012657.1
Basic Information
- Insect
- Danaus chrysippus
- Gene Symbol
- -
- Assembly
- GCA_004959915.1
- Location
- RPCZ01000066.1:1041000-1043261[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.4e-06 0.00039 20.9 1.1 1 21 7 27 7 28 0.95 2 19 3e-06 0.00022 21.7 0.1 3 23 36 57 35 57 0.97 3 19 2.6e-06 0.00019 21.9 0.5 2 23 66 88 66 88 0.96 4 19 0.00031 0.022 15.4 3.8 2 23 97 119 96 119 0.95 5 19 0.00012 0.0088 16.7 0.3 2 23 126 148 126 148 0.96 6 19 0.00022 0.016 15.8 2.9 1 23 181 204 181 204 0.98 7 19 0.00026 0.019 15.6 0.7 1 23 238 261 238 261 0.96 8 19 0.0015 0.11 13.2 5.0 1 23 290 312 290 313 0.95 9 19 0.51 37 5.3 0.9 2 21 321 340 320 341 0.93 10 19 0.11 8.3 7.3 3.5 3 23 351 372 350 372 0.95 11 19 0.0073 0.53 11.1 5.5 1 23 392 415 392 415 0.96 12 19 3.1e-05 0.0022 18.5 0.9 2 23 422 444 422 444 0.96 13 19 0.00017 0.012 16.2 2.5 2 23 451 473 451 473 0.95 14 19 0.0096 0.7 10.7 1.5 1 23 479 502 479 502 0.96 15 19 0.08 5.8 7.8 5.4 2 23 510 532 510 532 0.95 16 19 0.0017 0.12 13.0 0.3 1 23 539 562 539 562 0.96 17 19 0.4 29 5.6 1.6 1 13 569 581 569 587 0.88 18 19 0.0024 0.17 12.6 2.5 3 23 604 625 603 625 0.92 19 19 7.6 5.5e+02 1.6 0.8 1 10 675 684 675 685 0.90
Sequence Information
- Coding Sequence
- ATGAAACGGAGGGGTGATTATGTGTGCAATTCCTGCAACCATTCATTCACAAGGAAAAGCAATCTTGAAACTCATATACTAAATGGGAACTGCCAATCTAATGCATGCAATATATGTGATAGAAGATTTGCTAACTCGGCATCATTACAAGCACATATGTCGAGAGGCCACAACAAATTGGGTAAACCGCAGCCCGAGTGCGATTTGTGCGGACGGATATTCACAAGAAAACACAATCTCGTATCCCACATGATAGTTGTACACTTGCAGGCCGgcaaacaaaacataacttgtaatttatgtgatcgtaaatttaatatcgagAGAAATTTGAAACGGCACATGAAGCATAAGCATACATTCGTAGATTATCCGACCTGTGATTTATGTAAGAAGAACTTCAAAGACAAGGAATTACTTGCAGAGCATATAGAATCAGTGCATTTGACAAATTTTTCAGTTCCAACTGAGaattatatggaaaataaaagcgataaattgttaaaaaattggTCGGAAATACATAAGGATAAATCCGTTTTTAAGTGTAATATATGTTCGAAAATGTACTTATCAAGTCAAAGTTTGAAACGACATACAAGAACTTCACACGGAGACAAGAATTACTGTAAATATTGTTGCAAATTCATCAAAGAAGATTTcgacaaacattttaattattgtaataaaaacaatgaggagaaatacatatttaaatgtgagGTTTGTAATGCTATATTTGATCATGAGAATTCACTGAGAAGTCATATAAAAGAAGAACATAGTTTTCAACAGTTTTACGACCACTGCAAGAAATCTCTACTGAATATAACACCTTGGAAATTACCTAAAAAGGATAATATTTGGCATAGCTGTGAATTTTGTTCTAACACATTTTCATCGGTATACGATTTGAAAGATCACATGAAATCTCATCACGACGTTGAATACAACTTATCCACTTGCAacgtatgttttaataaattttacagtaAAGAAACTATGTTAGCACACAAAAAGAACTGTTTCCCGCCAAAAAACGCGAACGCCTGCTGTCATTGTGATAAACTGTTCACTGATATATCGAGTTTAAATTTTCACGTAAGAATATTTCATCCTCAAGTTAAAACTGCTgattcaaaaataacaaataagcGTGAGGATCTTGGTTCTTTTAAATGTGATCATTGCGACAGAATATATTACAGCGATAGATCCTTGAAACACCACGTGAAGTTAAAACATAGCAGCGACGAAGCCGCCGAATGCCAATACTGTGGAAAAATAtgcaataacaaatattatctgGCATCCCATATCAAAATAGTTCATAATAACGACTACTGGGCGAAATGCGATTTCTGTGATAAACAATTCAAATCGAAAAGAAACATTCGTCGGCATATTGAATACACACATTTAGGCATGCAGAGGTATAAGTGTATTGAATGTGAAACACTATTTAAAGAGAAAAGGAGTTTGAGAAAGCATGTTAGGATAAAACATCCAGATTCAACTGCGTTCCCACAGTgccatatatgtaaaaaacggTTCGAATCAGCTAAATCTTGTAAAATACATCTAAAATTACTCCATTCCTTCAATATGAATACCCATCCTTGTGATTTATGTTCAGTGTCTTTTGATTCTCTCGaagctttaaatattcatctaTCAACGAAACATCTCGCTAAAGATGAAATATACAAATGCGAGGAATGCAATTTAGTTTTCAAAGGACAAATAACATTCGATTGTCACAACGATAATTATCACGGGTGCGACAGTAAAGGCAAGAATCTACCGCGTTGTATAATATGCGCGAAAGATTTCAGAACTCGTAAAACTTTAAAGCGTCACATAAAGAGATTCCATGAAGAATTTAACGTAGAGGAATTAGCTACATACGGTACAAAGAAacgtatatttaatgtaaattgcaGTgagtgtattaaaaatttcaataatgatttttattttatggtttACTCCAAAATGAAGGATATGAGTGATTCGTTCATTTTCAAATGTGAATTGTGTTCTTATTCGTACAATTGTCTTGAATACGCCATACAGAGGTACAAACAGAGCGTTGACGTAAAAGGAAAGTTGTATTTGAGTGAGTTGTGTACGACGGAAATGAGTGAAAATGACTCGGATAGTGAACAACATGTCTCTGAAAGCAATGTCGATATAAAAAGTGATATGGAATATGTTGAATACAATAATACTACTATTAAAATTGAGCCGTTGTCTCCATGA
- Protein Sequence
- MKRRGDYVCNSCNHSFTRKSNLETHILNGNCQSNACNICDRRFANSASLQAHMSRGHNKLGKPQPECDLCGRIFTRKHNLVSHMIVVHLQAGKQNITCNLCDRKFNIERNLKRHMKHKHTFVDYPTCDLCKKNFKDKELLAEHIESVHLTNFSVPTENYMENKSDKLLKNWSEIHKDKSVFKCNICSKMYLSSQSLKRHTRTSHGDKNYCKYCCKFIKEDFDKHFNYCNKNNEEKYIFKCEVCNAIFDHENSLRSHIKEEHSFQQFYDHCKKSLLNITPWKLPKKDNIWHSCEFCSNTFSSVYDLKDHMKSHHDVEYNLSTCNVCFNKFYSKETMLAHKKNCFPPKNANACCHCDKLFTDISSLNFHVRIFHPQVKTADSKITNKREDLGSFKCDHCDRIYYSDRSLKHHVKLKHSSDEAAECQYCGKICNNKYYLASHIKIVHNNDYWAKCDFCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRIKHPDSTAFPQCHICKKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFDSLEALNIHLSTKHLAKDEIYKCEECNLVFKGQITFDCHNDNYHGCDSKGKNLPRCIICAKDFRTRKTLKRHIKRFHEEFNVEELATYGTKKRIFNVNCSECIKNFNNDFYFMVYSKMKDMSDSFIFKCELCSYSYNCLEYAIQRYKQSVDVKGKLYLSELCTTEMSENDSDSEQHVSESNVDIKSDMEYVEYNNTTIKIEPLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00421543;
- 90% Identity
- -
- 80% Identity
- -