Dchr006250.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Danaus chrysippus
Gene Symbol
-
Assembly
GCA_004959915.1
Location
RPCZ01000067.1:1185205-1195286[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.6e-05 0.0055 17.3 0.1 3 23 128 148 127 148 0.97
2 16 6.9e-07 5e-05 23.7 1.2 1 23 154 176 154 176 0.99
3 16 4.3e-06 0.00031 21.2 2.7 1 23 182 204 182 204 0.99
4 16 7.6e-06 0.00055 20.4 1.6 1 23 219 241 219 241 0.98
5 16 4e-05 0.0029 18.2 3.1 1 23 256 278 256 278 0.98
6 16 2.7e-07 2e-05 25.0 1.5 1 23 293 315 293 315 0.99
7 16 0.00012 0.0088 16.6 2.8 1 23 321 343 321 343 0.98
8 16 4.2e-06 0.0003 21.2 2.0 1 23 369 391 369 391 0.99
9 16 0.028 2 9.2 1.8 1 23 398 420 398 420 0.98
10 16 4.7e-07 3.4e-05 24.3 2.3 1 23 426 448 426 448 0.99
11 16 0.032 2.3 9.0 1.8 1 23 455 477 455 477 0.98
12 16 1.9e-06 0.00014 22.3 1.5 1 23 483 505 483 505 0.99
13 16 0.00036 0.026 15.2 0.7 1 23 512 534 512 534 0.99
14 16 2.1e-06 0.00015 22.2 1.9 1 23 540 562 540 562 0.98
15 16 0.0015 0.11 13.2 0.3 1 20 568 587 568 590 0.93
16 16 2.9e-05 0.0021 18.6 1.3 2 23 597 618 596 618 0.96

Sequence Information

Coding Sequence
ATGTTCGAACAACAAATCAAGGCCGAGCCTATGAGCTTTTACACACATTCACATGTAAATACTGGACCCCCAACAATAATGCGCTCGGATTCCGGCCATGGCATAATCAGTATGAACCAGCATCATCCCCAAGAGGACTCCAAGGACAGTCTAATACAACAACAAGTACAACACCAACAAGATCTGATGGAACAACACCAACAGGACTTGCAGCATGACGATGATGTtgataatTTAAGCTTCAAAGGAATGGATGATGAAGGTGTTGAATTGGACATGGATGGCAGACAATGTTCTCAGGGCATGGTCGATATGGGATCAGTTCAAACCAAAATGGAAGTCTCAAACGGGGGTGGGATGCCGAGATCGAAACCACAAGCTTGTAAAGTGTGTGGTAAAGTGTTGTCATCTGCATCATCATATTATGTTCATATGAAACTCCATTCTGGCAACAAACCTTTTCAATGCACGgtaTGCGACGCAGCGTTTTGTCGCAAGCCTTATCTCGAGGTTCACATGCGCACGCACACCGGCGAGCGTCCCTTCCAGTGTGATCTGTGCCTAAAACGCTTCACACAGAAATCCAGTCTTAATACGCACAAGCGCGTACATACCGATGAGCACATGCGAGCCTTGATGGTGAAGGATCGGCCCTACCAGTGTGAGGTCTGTCTGATGCGCTTCACTCAGAGCTCCAGCCTCAACAGACACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAAAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAGATACACACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGACCTTACACGTGCCGTCCCTACCTGGACATTGACATGCGCACGCGTACAGGCGAGCGGCCGTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAGACGGACGCACACAGTCCAGGGGAGACCGTTCCAGTGCCTGTCGTGCCCGGCCGCCTTCACCTGCAAGCAATATCTGGAGATACACACGCGCACGCACACGGGCGAGCGGCCCTATCAGTGCGACATCTGCCTCAAGCGGTTCACGCAGAAATCCAGTTTGAACATCCACAAGCGGACGCACTCAGTTCAGGGCCGGCCGTTCCAGTGTCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAGTCTACACTCAATATACACAAAAGAACGCACACAGTGCAAGGGAGGCCGTATCAGTGCATGGAGTGCCCGGCGGCGTTCACATGCAAGCCGTACTTGGAAATACACATGCGCACTCACACTGGCGAGCGTCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACCCAGAAATCAACACTCAACATTCACAAGCGAATTCATACCGgCGAACGTCCATACGCATGTGATATTTGCCAAAAACGATTCGCAGTTAAAAGCTACGTAACAGCGCACCGATGGTCCCATGTTGCGGATAAACCTCTGAATTGTGAGCGATGTTCTATGACGTTCACCTCCAAGTCCCAGTTTGCACTTCACATTCGGACCCACGCCAGTGGACCCTGCTACGATCACCACAACCGCGTCCACCGTGAGAACCACAGCAACATATCAGCGAACAGCATCGGCACCATCAACAGCGTGGCTACAAACACTAACTCAAACAACGGGAACTACGACTCGCCCGGCGTGTGCGACCTCAGTTTCGTGCCGATGGTGAATCGCTACATGACGTCCCAGGGCACGCAGGTTTCTATGCAGGACACGAAAATGTCCGCCATGTCGCCGCAGTCGATAGCGTCAATATCGTCGCCGCCGCCCCCGCACACTCCCACGCCGCAGCCGCAGATGTCCATGCGACTGTCTGATTGA
Protein Sequence
MFEQQIKAEPMSFYTHSHVNTGPPTIMRSDSGHGIISMNQHHPQEDSKDSLIQQQVQHQQDLMEQHQQDLQHDDDVDNLSFKGMDDEGVELDMDGRQCSQGMVDMGSVQTKMEVSNGGGMPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYQCEVCLMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYTCRPYLDIDMRTRTGERPYQCDACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHASGPCYDHHNRVHRENHSNISANSIGTINSVATNTNSNNGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTKMSAMSPQSIASISSPPPPHTPTPQPQMSMRLSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01034828;
80% Identity
-