Basic Information

Insect: Danaus chrysippus
Gene Symbol: -
Assembly: GCA_004959915.1
Location: RPCZ01000041.1:1048763-1063783[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 6.3e-05 0.0045 17.6 2.2 1 23 383 405 383 405 0.97

2 19 0.012 0.85 10.4 1.3 1 20 411 430 411 433 0.93

3 19 0.00064 0.046 14.4 3.3 2 23 451 472 450 472 0.97

4 19 2.8e-05 0.002 18.7 5.3 1 23 478 500 478 500 0.97

5 19 8.9e-06 0.00064 20.2 7.3 1 23 506 528 506 528 0.97

6 19 5.8e-07 4.2e-05 23.9 2.9 1 23 534 556 534 556 0.97

7 19 7.9e-05 0.0058 17.2 6.7 1 23 562 584 562 584 0.97

8 19 3.5e-05 0.0025 18.4 5.4 1 23 590 612 590 612 0.98

9 19 3.8e-07 2.8e-05 24.5 1.9 1 23 618 640 618 640 0.98

10 19 3.9e-05 0.0028 18.2 7.9 1 23 646 668 646 668 0.98

11 19 0.00014 0.01 16.5 6.6 1 23 674 696 674 696 0.95

12 19 5.9e-06 0.00043 20.8 4.3 1 23 702 724 702 724 0.98

13 19 1.5e-05 0.0011 19.5 6.4 1 23 730 752 730 752 0.97

14 19 0.00027 0.02 15.5 6.8 1 23 758 780 758 780 0.97

15 19 2.4e-06 0.00017 22.0 6.0 1 23 786 808 786 808 0.98

16 19 4.4e-05 0.0032 18.0 7.8 1 23 814 836 814 836 0.97

17 19 4.9e-06 0.00036 21.0 4.2 1 23 842 864 842 864 0.96

18 19 0.00042 0.031 14.9 0.3 1 23 871 893 871 893 0.96

19 19 0.044 3.2 8.6 5.6 1 23 903 925 903 925 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	6.3e-05	0.0045	17.6	2.2	1	23	383	405	383	405	0.97
2	19	0.012	0.85	10.4	1.3	1	20	411	430	411	433	0.93
3	19	0.00064	0.046	14.4	3.3	2	23	451	472	450	472	0.97
4	19	2.8e-05	0.002	18.7	5.3	1	23	478	500	478	500	0.97
5	19	8.9e-06	0.00064	20.2	7.3	1	23	506	528	506	528	0.97
6	19	5.8e-07	4.2e-05	23.9	2.9	1	23	534	556	534	556	0.97
7	19	7.9e-05	0.0058	17.2	6.7	1	23	562	584	562	584	0.97
8	19	3.5e-05	0.0025	18.4	5.4	1	23	590	612	590	612	0.98
9	19	3.8e-07	2.8e-05	24.5	1.9	1	23	618	640	618	640	0.98
10	19	3.9e-05	0.0028	18.2	7.9	1	23	646	668	646	668	0.98
11	19	0.00014	0.01	16.5	6.6	1	23	674	696	674	696	0.95
12	19	5.9e-06	0.00043	20.8	4.3	1	23	702	724	702	724	0.98
13	19	1.5e-05	0.0011	19.5	6.4	1	23	730	752	730	752	0.97
14	19	0.00027	0.02	15.5	6.8	1	23	758	780	758	780	0.97
15	19	2.4e-06	0.00017	22.0	6.0	1	23	786	808	786	808	0.98
16	19	4.4e-05	0.0032	18.0	7.8	1	23	814	836	814	836	0.97
17	19	4.9e-06	0.00036	21.0	4.2	1	23	842	864	842	864	0.96
18	19	0.00042	0.031	14.9	0.3	1	23	871	893	871	893	0.96
19	19	0.044	3.2	8.6	5.6	1	23	903	925	903	925	0.99

Sequence Information

Coding Sequence: ATGAATCAGGATCATCACAATATAAACACGGGTGGTGGCCAGCCACCAGGCAATTCTGAGCCTCAAACTCAAAGAGTTCAATCATCGCAGCAGCAACAGCAGCAGCAAACACAAAGTAACAGTTTAACTCCCACAACATCTGCCACTGATTTACGGGTCAATTCGGCGGCAGTTAACGTTGCTTTGTCAAGCGTAGCTAAATATTGGGTGTTTACTAATTTGTTTCCGGGTCCAATACCTCAGGTGTCTGTGTATGGCGTGCCCACTGGTGCAAGAATTGAAAATGGAAAACCTGTAcagGATCTAGGTCAAGCGCATGCTAGTATCTTGAATGGTGATCCTAGTATTATACTAGGTCATGCAGGACAACCCCAGGTCACAGTTTCTGCTGCGGGACAACAGATTCCCGTCTCCCAGATAATCGCAACTCAATCAACGCAAGGACatgcaACTGAGTTTGTACAACATAACGTTGACATGGGTCATCACTCGCAGCAGCATTTGATGCAACAACAGCTAGCCATGGCGAGACCCGATCACGCTAATCAACAGATCCAACTGACAGTGAGTGAAGATGGGATCGTAACAGTTGTGGAGCCAGGTGGAAACAAACTGGTTGAAAAAGAAGAATTACATGAGACTATAAAGATGCCCACTGATCATACACTCACTGTACATCAGTTACAACAGATTGTTGGACATCATCagGTATTAGACAGCGTGGTTCGTATTGAACAGGCGACGGGCGAGCCGGCCAACATACTTGTGACTCAAAACCCTGACGGTACCACCTCCATAGAAACTAGCGCCGCGGACTCGCTGACCGTCAAGGATGAAAAGGGAACTAAAATGGAGCCCGCACAGTTTGCCATACCAGCCGAAATCAAAGACATCAAGGGCATTGACCTTAAGAGTGCGATGGGTATGGAAGGGGCTGTGGTAAAGATATCAACTGGCTCCGAACAACACGATCTACACACGATGTATAAAGTTAATGTTGAAGATCTATCACAGTTGTTAGCCTATCATGAGGTCTTTGGAAAATTAAACACTGAGGCACAACCCCAGGCTAAGgtCATAAACGAAGTGGAAGTTGAAGCCGGTACTAGTGCGACCATGTCGGAAGCGGAGTCATCTCCCGGCCATCATTCTTGTGATATATGCGGGAAAATATTCCAATTCAGATACCAACTTATAGTACAcagACGGTACCACGGTGAAAACAAACCACATACGTGTCAAGTGTGCGGGTCCGCTTTCGCTAATCCAGTTGAACTTTCCAAACATGGGAAATGTCATTTGGCGGGTGATCCAACCGAACGCCAAGCCAAACGTCTTGCTCAGGACAAACCATGTCAGTTCTGCGCCAAGACGTTCACTCGCAAGGAGCATATGGTGAACCATGTCCGTAAACACACGGGCGAGACTCCGCACCGCTGTGAGATATGTAAGAAGAGCTTCACGAGGAAAGAGCACTTCATGAACCACGTTATGTGGCACACAGGTGAAACACCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGagatcccatacaaacgatacTCCCTTCAGATGCGATCTATGCGGCAAATCATTCACCAGAAAGGAACACTTCACCAATCATATATTGTGGCACACCGGTGAGACTCCCCACCGCTGCGACTTCTGTTCGAAGACTTTTACCCGTAAGGAGCATCTGTTGAACCACGTGCGACAACACACGGGCGAGTCTCCGCACCGCTGTAACTACTGCGCGAAATCATTCACAAGACGAGAACATCTCGTGAACCACGTGAGGCAACATACTGGCGAGACGCCTTTCCAGTGTGGATACTGCCCTAAGGCTTTCACTAGAAAGGATCATCTTGTAAACCACGTCCGGCAGCATACTGGAGAATCTCCACACAAATGTTCGTTCTGCACGAAGTCTTTCACTCGCAAGGAACATTTGACCAACCACGTGCGTCAACATACAGGGGAATCTCCGCATCGGTGTATTTATTGCTCCAAATCTTTCACTAGAAAAGAACATTTAACTAATCACATTAGACAACATACGGGCGAGACTCCTCACAAGTGCACGTACTGTCCGCGTGCGTTCGCGAGGAAGGAACACCTCAACCAGCACGTGAGGCAGCACGTGGGCGACTCGCCGCACACCTGCTCCTACTGCCAGAAGACCTTCTCCAGGAAGGAGCATCTAGTGACACATGTCCGACAACACACGGGTGAGACTCCATTCAAATGCACCTTCTGCGCTAAATCGTTCAGTCGAAAAGAGCATCTAACGAATCACGTTCACCAACATACCGGCGAAACGCCGCACAAATGCCCCTTCTGTACCAAGACGTTCTCCAGAAAGGAACACTTGACTAATCATGTTAGAATCCACACAGGAGAATCTCCACATCGATGTGAATTTTGTCAGAAGACATTTACTCGTAAGGAGCATTTGACGAATCATCTAAAGCAACACACCGGTGATACGCCGCACGCCTGCAAAGTGTGCTCCAAACCATTTACAAGAAAAGAACATCTCATTACTCATATGAAgTCTCACAGCTGTGGTGAGCGACCATATAGTTGTGGCGAATGCGGCAAGTCCTTCCCTCTGAAGGGCAATCTATTATTCCATGAGCGATCTCACAACAAAAACAACGCAGCTAACAAGCCATTCCGATGTGATGTGTGCTCCAAAGAGTTTATGTGCAAAGGTCATCTAGTAACTCATAAAAGAACTCACGCGGACAATGAAACACCCGCCCCTGAAGCCGCTCCAGAAGATGATTGTGGAGATTTCAACAAATGCGAAAAAGATGCTGAGAGACCTGAACGAAAACACGATATTAGGACAACCACAGAAAATAGACCAGCAGAAACGAATGTCACCAGCAATCAGACAACGAATACAGCAGTGATGCAAATAACTAGCCagGAAGTTAGAACATGCCCCACAACAAGTACGCCATCTGTTGCCggtacatacacacatacaaatacCCATCACAGTGGAACGATAACACACCATCCAGTGTCCGTGAATTACTAG
Protein Sequence: MNQDHHNINTGGGQPPGNSEPQTQRVQSSQQQQQQQTQSNSLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGVPTGARIENGKPVQDLGQAHASILNGDPSIILGHAGQPQVTVSAAGQQIPVSQIIATQSTQGHATEFVQHNVDMGHHSQQHLMQQQLAMARPDHANQQIQLTVSEDGIVTVVEPGGNKLVEKEELHETIKMPTDHTLTVHQLQQIVGHHQVLDSVVRIEQATGEPANILVTQNPDGTTSIETSAADSLTVKDEKGTKMEPAQFAIPAEIKDIKGIDLKSAMGMEGAVVKISTGSEQHDLHTMYKVNVEDLSQLLAYHEVFGKLNTEAQPQAKVINEVEVEAGTSATMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGENKPHTCQVCGSAFANPVELSKHGKCHLAGDPTERQAKRLAQDKPCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCIYCSKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFARKEHLNQHVRQHVGDSPHTCSYCQKTFSRKEHLVTHVRQHTGETPFKCTFCAKSFSRKEHLTNHVHQHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGDTPHACKVCSKPFTRKEHLITHMKSHSCGERPYSCGECGKSFPLKGNLLFHERSHNKNNAANKPFRCDVCSKEFMCKGHLVTHKRTHADNETPAPEAAPEDDCGDFNKCEKDAERPERKHDIRTTTENRPAETNVTSNQTTNTAVMQITSQEVRTCPTTSTPSVAGTYTHTNTHHSGTITHHPVSVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00247403;
90% Identity: iTF_00419902;
80% Identity: -