Dchr001130.1
Basic Information
- Insect
- Danaus chrysippus
- Gene Symbol
- -
- Assembly
- GCA_004959915.1
- Location
- RPCZ01000255.1:62942-63539[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-07 5.7e-05 22.9 0.0 14 39 31 57 19 62 0.84 2 2 1.2 4.9e+02 0.7 0.0 14 23 143 151 136 153 0.77
Sequence Information
- Coding Sequence
- atgccgcataaatataaaaggaaaatagGAGCACCCGATCGTGCTCGTTGGTCAAAAGAAGCCCTTTGCAAAGCTTTTATGGAATTGGATAAAGGCCAGGTCggtttgaatgaaatatctCGTCGTTATGGTATTCCATCTCGAACTTTGAGGAGGcgatattataatgaatataactatgaaaaaattactttgGGACAACGTACCACACTGGACTTTGACAGTGAGAAAATTCTCGTAGCTCACATTCAAAAACTACAAAAGGCAGGCGTACACACAACACGACAGGATGTAAGAAGACTAGCTTTCGAATTTGCCGAGAAACTTGGTTTAGAAAAACGTTTTAACAAAGAAACACGTATGGCTGGTTATTATTGGCTCCAATCATTTCTTGAACGACACCCAGTACTCCGTATTCGCGAGGCAGAAGGTTTGTCTATTGCAAGAGCTCAAGGACTAAATCGAGATGAAGTTAACAATATTTGA
- Protein Sequence
- MPHKYKRKIGAPDRARWSKEALCKAFMELDKGQVGLNEISRRYGIPSRTLRRRYYNEYNYEKITLGQRTTLDFDSEKILVAHIQKLQKAGVHTTRQDVRRLAFEFAEKLGLEKRFNKETRMAGYYWLQSFLERHPVLRIREAEGLSIARAQGLNRDEVNNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -