Dchr005114.1
Basic Information
- Insect
- Danaus chrysippus
- Gene Symbol
- -
- Assembly
- GCA_004959915.1
- Location
- RPCZ01000002.1:1351012-1353093[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-09 2e-06 27.6 0.0 3 37 24 58 22 64 0.90
Sequence Information
- Coding Sequence
- ATGCCTCGAAAATCAAACGTAAAGAAACCTGGGGTGCGGAGCTATGGCACCTTATCAAATTATTCGTCAGAGAAGCTAGAAGAAGCATTACAATTGATTAAATCTGGGGCTTTAACACAAAGGCAAGTAGCCAAACGTTACACAATTCCAAGATCtactcttaataataaattgagaaTGAAGCACAGTAAAGCTGTTGGACGACCAATATGTCTAACCATGGAAGAGGAAATAATGTTTCGGGATCATTTGCTTGCTCTGAGTGATTTCGGTATACCAGTGggaattaatgattttaaaatgcttGTTAAGCGTTACTTGACATCTATCAATAAACTTGTACCGGTGTTCACTGATAATACTCCAGGTTATGAGTGGGGAAAGCTATATCTAGAGAGACATCCAGCTCTCAAGGAGAAAATCGCTCACAATATTTCCCGAAAAAGAGCACAAGTTAATGAAGATATGGTCAATAAGTTTTTTGATCTGTTAACACTTGAAGCTGATGGTGTACCTCCAGAAAATATCTACAACATGGACGAATCCGGCTTTCATGACGATCCAGGTAAACAAAAACTCTTATTCCGCCGTGCTAACCGACATCCAGAGTTGATCCGAAATTCCACAAAATCATGTTTTACTGTTGTTTTTTGTGGAAATGCAGTAGGAGAATTCGTTCCGccgtttttcatatttaaaggCAAAAATTGCTGGTCTGACTGGTTACAAAATGCTCCTAAGTCTTCTAAAATGACCGTATCAAAATCAGGTTGGATTGACGCGGATATTTTTGATGAGTGGttagaaaaacatttcattccaATAGTGGATAAAAAACCGGGGAAGAAAATTCTACTTTGTGATAATCTTAGCGCACATATAACTGTTAAGGCACTAAAACTTTGTGAGGAACATAACATTAAGTTTATTTGTCTCATCCCCAACTCCACTCATCTTTTACAACCCTTGGATGTAGGGTTCTTTTCCTCTTTAAAAACAGCCTGGAGGACAGTGTTGAGAACGTGGCGGCTAACCCAAAGAGGTAGGAAAGCTATTAGTTTACCAAAGAATGTTTTTGCTCAGTTGCTAAAACTTACCTTGGACCAATGTGAATCAACTGCAGGATTAAATCTGATTGCCGGTTTCCGCAAATGTGGAATACATCCAGTGTCACGAAGAGAAGTTCTTCAAATCTTACCTGGGTATGCAGCTACTGACGTTCAAACATCTGTTGGTGAGACcttcaaagaatatttaaaagaagtcaGAGAGTCAGACCTAAATATCAAGTCATGTAGAAAGTTTCAATTACCTGTTGAAGCAGAAAAGGCAGTCTCGGCAGAAGAAGTTgaaacattttacaaaaataggaTTGATGAGCAGACCAAGAAGAAAGAAGAACCTGTAAAGAGAGGCAGACCAGTTGGTTCCAAAAATGTTAAcgggaaaaagaaaaaaacaatagaacagaaaaataatacagCTGCAGATCTATCAGTCCCAAAAAACATGAATATTGGTGATAGAAGCCATTCTGATGCAGATATAATGAGCAATGTACCAGAAACTATTGCAAGTAATGATGACATGggcaaagaaaattattgtaatacaataaatgtgCTACATATTGGACTAGAAGACACACGTGCTGCTAACCCTGAATCAGACACTAAAGAACGACCTTTTGATGACCCCACTAAAGAACCAGAAGAAGCAGTGGCACATTTGGTTGGTTTTGAAAATATCACAGGCGATTTTTTGGTTCATTCAGATGGAGGAAAACTTGTGCAGATAAATGAACAAGAAGAAGTGTTTGAGGTAAACAAATTTTGTGTGTTTAAGGATGAAGGTACCTTGTTCCCTGgacaaataagaaaaataagtgAATCTTCTACATTGTGTGTCAGCTGTCTAACTAAAAACTTGAACGGAGGATGGATCTGGCCAGATAAACCAGACCTAACTACAATCACTGACCtttcaatgattataaaagtGCTGAGagataacaaaatatctaaaaggggcaaaatcatttatattgatGATGACTTCTTGTCTATGGAGTGGGGAGAATAG
- Protein Sequence
- MPRKSNVKKPGVRSYGTLSNYSSEKLEEALQLIKSGALTQRQVAKRYTIPRSTLNNKLRMKHSKAVGRPICLTMEEEIMFRDHLLALSDFGIPVGINDFKMLVKRYLTSINKLVPVFTDNTPGYEWGKLYLERHPALKEKIAHNISRKRAQVNEDMVNKFFDLLTLEADGVPPENIYNMDESGFHDDPGKQKLLFRRANRHPELIRNSTKSCFTVVFCGNAVGEFVPPFFIFKGKNCWSDWLQNAPKSSKMTVSKSGWIDADIFDEWLEKHFIPIVDKKPGKKILLCDNLSAHITVKALKLCEEHNIKFICLIPNSTHLLQPLDVGFFSSLKTAWRTVLRTWRLTQRGRKAISLPKNVFAQLLKLTLDQCESTAGLNLIAGFRKCGIHPVSRREVLQILPGYAATDVQTSVGETFKEYLKEVRESDLNIKSCRKFQLPVEAEKAVSAEEVETFYKNRIDEQTKKKEEPVKRGRPVGSKNVNGKKKKTIEQKNNTAADLSVPKNMNIGDRSHSDADIMSNVPETIASNDDMGKENYCNTINVLHIGLEDTRAANPESDTKERPFDDPTKEPEEAVAHLVGFENITGDFLVHSDGGKLVQINEQEEVFEVNKFCVFKDEGTLFPGQIRKISESSTLCVSCLTKNLNGGWIWPDKPDLTTITDLSMIIKVLRDNKISKRGKIIYIDDDFLSMEWGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418919; iTF_01443770;
- 90% Identity
- iTF_00418919; iTF_01443770;
- 80% Identity
- -