Dchr019984.1
Basic Information
- Insect
- Danaus chrysippus
- Gene Symbol
- -
- Assembly
- GCA_004959915.1
- Location
- RPCZ01000047.1:349075-349743[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.3e-10 3.9e-07 29.9 0.0 5 38 1 35 1 40 0.91 2 3 9.4 4e+03 -2.2 0.0 10 18 41 49 41 49 0.85 3 3 8.1 3.4e+03 -2.0 0.0 25 38 73 87 72 91 0.71
Sequence Information
- Coding Sequence
- ATGAAACAAGCTATTGAAGCTGTACGAACTAAAAAAATGGGGTATAAAAAGgcagttaaattatttaatgtgccAAGAGCTACTTTGAAAGATTATGTAAAAAAGTCTGACAAGCCTACAGAAGATATAGTTTCTGGAAAAATGGGAAGAAAACCAGTTTTGTCACCTGCATTAGAAGAAGAGTTGTTGAACTATTGCCTGCAAAtggaaaataattactatgGTGTGACCGCTTCTGATTTAAGACGAATGGCTTTTCAATTGGCtatcagaaaaaatattccacgCCCATTTTCACGAACCAAAAATAAAGCAGATAAGAATTGGATGAAGTTATTTATGGCTCGTCATCCTAACTTGTCTTTTTGCAAACCAGAATTTCTATCACGAGCTCGCAAACAAGGTTTTACTGCAGAAAATGTTAAATCCttttttgacatattaaaacctggattaaaaaagataaatttcaacctcaataaaatatttactgtagACGAAACAGGGATCACAACGGTTCAGCATAAAGTGAGAAAAATCCTTACGACGAAAGGCAAGAAAGCAATTCACAAATTATCGTCTACTGACCCAATTTTAGTTTCTACTGGTGAAGAAAATAGTGACGATAATGACGCTGAATGCCCAGTTTGTCATAAAAGTTTTTCCTAA
- Protein Sequence
- MKQAIEAVRTKKMGYKKAVKLFNVPRATLKDYVKKSDKPTEDIVSGKMGRKPVLSPALEEELLNYCLQMENNYYGVTASDLRRMAFQLAIRKNIPRPFSRTKNKADKNWMKLFMARHPNLSFCKPEFLSRARKQGFTAENVKSFFDILKPGLKKINFNLNKIFTVDETGITTVQHKVRKILTTKGKKAIHKLSSTDPILVSTGEENSDDNDAECPVCHKSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00420485;
- 90% Identity
- -
- 80% Identity
- -