Dchr019737.1
Basic Information
- Insect
- Danaus chrysippus
- Gene Symbol
- -
- Assembly
- GCA_004959915.1
- Location
- RPCZ01000032.1:1883795-1884565[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2 2.6e+03 -1.6 0.2 35 45 3 13 2 13 0.89 2 2 8.7e-12 3.7e-09 36.4 0.0 3 39 16 53 14 56 0.91
Sequence Information
- Coding Sequence
- ATGCCACGACGTTACCAAAGGAAGACTGAGACCAAAAACAAATTAGAAGATTTAGAAAAAGCCGTTCACGATGTAAGGAACAAAATACTGTCGTTAGGAAAGGcatctattatttattctgttCCAAAAAGTACTATACATGACTATCtcaagaaagaaataataaatgaacctAAAACTGGAAGAAAAGCTATATTTACTGATGCACAAGAAACTGAATTAGaacaacatataattaaatgcagCAAAGTATTTTATGGCTTAACAATAGAAATGGTGCGAAAAATAGCTTTTAAATTTGCAGAAGTGAATCaattgaaacataattttgacAAAACATCTCAAATGGCAGGAAAAGACTGGTTTTATGGATTTAAAAAGAGACACCCTGAAATTTCGCTTCTCACTCCGATGAAAGACAGTCATGAggaaaaagaacaaaaaaagaaatataaagagCAGATAAAAGAAACTGAAAAGAccgtaaatacaaataaaggaaaaaaaggAGTGAAAAATCTTAGAGCATTTGCAGATGAGAATTATGAAATTGAGAAGCAAAAGAGGAATGTACCACGCAAAAAGAAGAAAGTCGATAAAGGAGCTACGACGGAGAAAGAGTATTATTGTCTGATTTGTGCCGAAAAGTATGAAGATCCTCCAGGTGAAGACTGGATTGAATGTCACAAATGTAGGTTGTGGGCCCACGAAAACTGCACAAGTGGTGAAAGCACTTCAAAGGGTTTTCTCTGTGATTTTTGTAGGAGTTAG
- Protein Sequence
- MPRRYQRKTETKNKLEDLEKAVHDVRNKILSLGKASIIYSVPKSTIHDYLKKEIINEPKTGRKAIFTDAQETELEQHIIKCSKVFYGLTIEMVRKIAFKFAEVNQLKHNFDKTSQMAGKDWFYGFKKRHPEISLLTPMKDSHEEKEQKKKYKEQIKETEKTVNTNKGKKGVKNLRAFADENYEIEKQKRNVPRKKKKVDKGATTEKEYYCLICAEKYEDPPGEDWIECHKCRLWAHENCTSGESTSKGFLCDFCRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01338606;
- 90% Identity
- -
- 80% Identity
- -