Dvit001614.1
Basic Information
- Insect
- Daktulosphaira vitifoliae
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold499:198310-204151[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 1.5 9.9 0.2 2 23 404 426 403 426 0.94 2 13 0.27 37 5.5 0.1 3 23 430 450 429 450 0.95 3 13 0.14 19 6.4 10.0 1 23 458 480 458 480 0.97 4 13 0.0098 1.4 10.0 5.1 1 23 486 508 486 509 0.95 5 13 0.072 10 7.3 0.6 2 23 527 548 526 548 0.97 6 13 0.00022 0.031 15.2 0.5 3 23 558 578 557 578 0.97 7 13 8.5e-06 0.0012 19.7 1.0 2 23 584 605 583 605 0.93 8 13 0.00036 0.05 14.5 4.3 3 23 613 634 611 634 0.94 9 13 0.00095 0.13 13.2 0.8 1 23 644 666 644 666 0.95 10 13 0.13 18 6.5 1.7 2 23 684 706 683 706 0.92 11 13 0.083 11 7.1 7.3 1 23 736 758 736 758 0.98 12 13 0.0071 0.99 10.5 1.8 1 23 764 786 764 786 0.95 13 13 0.0011 0.16 13.0 0.2 1 23 792 814 792 814 0.97
Sequence Information
- Coding Sequence
- ATGGCTTTAAGACTCTGCGCGGGTGGTTCTCAAATTAGTTTTTCTGACGATGTAAAGTGTTGCGTACCTACATGTGGAGCCACTCGAGAGGGTAATCGTACTTTACCATTTTATACTTTTCCTAGTAATGTTACACTATGTAGAGAATGGGTGGAAGAAATACAACTTCCTATTAATGATTTACAAAATTTGCACAGGACTCATATGGTGTGTTCGAAACATTTTACATCGTTTGATGGTGGAATGGTCTTGAACATAACAAACAATATTCTAGAAAAGACAAGTAACAAAAATAAAAAATGTGTTGCATTAAAGTTAATAAAAAATTCTGCCCTTACACAAACTTTAGATTATAATTGGTTAAGAAACTTAAAAAATACTGGTGTAGAATTATTATGTAGCAAATTTATCCAATGTAGAATTTGTACAAGTGTATCAGTACAAGCCTTGAATATCTATAGTAAATGTAATACAAGTTTAAAATTAGAAACACTAATTAACAAATTATTACCTATTAAGGTAAATGTAAATGATACTAAACCATTATATATATGTGTAGAATGTTTATTAAAGTTAACTCAATTTGAAGATGTTTTTGAAAGATGTAAAAAAAGTGATAAAATATTTAAATCCTCTTTTGTAAGTAGAACAAAAGAAAATATTCCAATAATTGAGCTTAGTGATAATAGTGATGAAGAATCAAAATCTTATCCAAATCAATCAAAACTAAGTATAAATTCTTCTAGAGCTAGTAATTTTATTCAAAAAGAATCTCGAAAACATAAAATCAAAATTCTAATACCAGGCAAAAATAACAAAGTTTCTTGTGTTGAATCAAAGAAGCCAAGCAACATTACTGACAAAAATAAAATAATTGAAATTGAATTTTTAGCAAATTATATTATATGTCATGGCAAAGAATGGGTTCATGAAATCCATGTTAGTGAATCACAGTTAAAATATAGTCAAAATACGATTGATCAAATACTTGAAGTTATCAAAGTTACTATGAATAAACAATGTCAAAATAATAATTCCAAAGTTGTTCCTTTAACCATTTTACCATCATGCCTTGAGAGAGTAGTATTACCTAAAAATAGTATTAGAACAGATCCTATAAATGATGATTATACTAATCAAATAAATGATGAAATAAGAATAAAAGCAGCTGAAATATTAATAAAAAGAAAATCAATGAAAAAAGGTTGGATATGCAAAAAATGTGGTTTAAAATTAGATAGTAGACAATTATTGATTGCACATGTTCGGTTCTATCATCCAAGGCCTTGCAGATATTGTGGAGAACTCATTACTCCGCGTGACCAACTTTACAATCATGAAAAAGAACATCAAAAACCATCACCCGATGGATTTATTTGTCATTTATGTGGTCGACATCTTAAAACACATAAAAGTTTAAATTTACATTATAAACATCATAAAAATAAAGAAAAATTTTGCTGTAACACTTGTAATTTACAATTTATCAATGGTTTTGGATTAAGAAAACACATTCGACAACATCATAAAGAATTACTTGTGAAAAAAAAACCCGAAGATATTCAAAAAGAACGTCAAAAATGCACTATATGTGATTTATGGTTAAGCTCACATTTAGCTTTACAAGTTCATATAAAAACCCATTTACCAATTGAAGAACGTATGAAAATTTGCCCTAAATGCAACAAGGTATTCATTAATGCACGAAGGTTTAAAATGCATGTGGAAACTCATGGATCATGCCCAATAAAATGTCCAGAATGTCCTCGTTCATTTCCTACTCAAGAGCATTTAAATAATCATTCCACTTATCATAAATTATCAGATCCTGTATGTTGTGATATTTGCCATCAATTTTTTAAAACTAAGACAACATTAAAAAGTCATATAGCTAGAATACATCAAAGAGTTCAGTATATTCAAAAAACATTTTCATGTATTTATTGCAAAACTGTGTATGCCAATAAAGAAGAACTGAAGAATCATGTTAATAAACACACTCCAAAAGAAAAAGCGCTAGCATTTGCAGGTGATAACTATGGCAAAGTTCAATGTAATATGTGCAATCGATTTTTTTTGTATAAATCACGATTGACAATGCATAAAATATATTATCATAGCAAACAATGTCAGCAGTGTGACAAATTAACAAATGATAACTCTGTTAATCATTACTGTAAACCTAAAGGTAGTAGAGCTTTGCAATATTGCTGTCAATATTGTATAAAACGTTTTAGCTCAAAACAACGATTGCATATACATGAACGCACACATGGTCTTGATTATAGATATCAATGTACTATTTGTAATAAATGGTTCACCAAAATGACAGCGCTTAAAACACACAGTTATTCTCATTCTAGTGAAAAAAATTATGCCTGCAATGTGTGTGGAAAGCTATTTAACTTGATTACTGCCATGAAAAAACATTTAAAAATTCATCAACATAATGAAAACCAATGTTTTGATAACTTGAACTCAGATAATGTACTAAATACAATAGCATTACCAATTACTGTAAATTTGCCTTCATCAAAATCAACAGAATTGTTAAACATAACTTCACCTAATTTTTTGTTAACCACTGAAAATCATAATGAATGTATTAATGTAGTCAGTGACTTAGAATCTCACCTTATTTAG
- Protein Sequence
- MALRLCAGGSQISFSDDVKCCVPTCGATREGNRTLPFYTFPSNVTLCREWVEEIQLPINDLQNLHRTHMVCSKHFTSFDGGMVLNITNNILEKTSNKNKKCVALKLIKNSALTQTLDYNWLRNLKNTGVELLCSKFIQCRICTSVSVQALNIYSKCNTSLKLETLINKLLPIKVNVNDTKPLYICVECLLKLTQFEDVFERCKKSDKIFKSSFVSRTKENIPIIELSDNSDEESKSYPNQSKLSINSSRASNFIQKESRKHKIKILIPGKNNKVSCVESKKPSNITDKNKIIEIEFLANYIICHGKEWVHEIHVSESQLKYSQNTIDQILEVIKVTMNKQCQNNNSKVVPLTILPSCLERVVLPKNSIRTDPINDDYTNQINDEIRIKAAEILIKRKSMKKGWICKKCGLKLDSRQLLIAHVRFYHPRPCRYCGELITPRDQLYNHEKEHQKPSPDGFICHLCGRHLKTHKSLNLHYKHHKNKEKFCCNTCNLQFINGFGLRKHIRQHHKELLVKKKPEDIQKERQKCTICDLWLSSHLALQVHIKTHLPIEERMKICPKCNKVFINARRFKMHVETHGSCPIKCPECPRSFPTQEHLNNHSTYHKLSDPVCCDICHQFFKTKTTLKSHIARIHQRVQYIQKTFSCIYCKTVYANKEELKNHVNKHTPKEKALAFAGDNYGKVQCNMCNRFFLYKSRLTMHKIYYHSKQCQQCDKLTNDNSVNHYCKPKGSRALQYCCQYCIKRFSSKQRLHIHERTHGLDYRYQCTICNKWFTKMTALKTHSYSHSSEKNYACNVCGKLFNLITAMKKHLKIHQHNENQCFDNLNSDNVLNTIALPITVNLPSSKSTELLNITSPNFLLTTENHNECINVVSDLESHLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418345;
- 90% Identity
- iTF_00418345;
- 80% Identity
- iTF_00418345;