Dvit017619.1
Basic Information
- Insect
- Daktulosphaira vitifoliae
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold99:373918-382236[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 9.8 1.4e+03 0.6 0.2 2 14 159 171 158 174 0.80 2 16 0.0032 0.45 11.5 7.5 1 23 667 690 667 690 0.97 3 16 6.8e-05 0.0095 16.8 0.6 1 21 692 712 692 712 0.96 4 16 7.8e-07 0.00011 22.9 2.0 1 23 771 793 771 793 0.98 5 16 0.16 23 6.2 0.5 1 18 838 855 838 855 0.94 6 16 1.8 2.5e+02 2.9 0.2 13 23 878 888 875 888 0.89 7 16 5.9 8.2e+02 1.3 0.2 3 20 911 928 910 930 0.90 8 16 7.7 1.1e+03 0.9 0.6 2 17 1085 1100 1084 1101 0.82 9 16 0.00093 0.13 13.2 0.9 1 23 1105 1127 1105 1127 0.97 10 16 0.0053 0.74 10.9 1.4 3 23 1163 1182 1162 1182 0.98 11 16 2.3e-05 0.0032 18.3 1.1 2 20 1189 1207 1188 1209 0.93 12 16 0.036 5 8.2 5.2 1 23 1243 1265 1243 1265 0.97 13 16 0.0014 0.19 12.7 1.4 1 23 1271 1293 1271 1293 0.95 14 16 9.1e-07 0.00013 22.7 1.7 1 23 1299 1322 1299 1322 0.97 15 16 0.0031 0.44 11.6 0.1 3 23 1327 1347 1326 1347 0.98 16 16 0.51 71 4.6 1.8 1 23 1353 1377 1353 1377 0.95
Sequence Information
- Coding Sequence
- ATGAAACGAAATAAGAAAAAAATATTGAAAAAAAAATTACGATTAGAACCGTATGTATTATTAGAAAGAATTGACACATCAAATATAAAAATAGGTCAAATTTGGAATAATCAAAAAAAGCCAAAACTTTTTCATGAGCCAGTAGTGTTATTAGATCACATCGATTTGGACAATTTAAAAATAAAAAAAAATTTTGGGAACTCTAATGAACTACTACTAGATAATCGACTGAATTTATATTTATCAAAAAAAAACATCAATTGTTTCAGACCTTTTGTCCTACTTGAACGATTATCGCCAAAAGTCTTAAACAAATATTTGAACCCATCTCTAGGTTTAAATAAGGAGAAAATTTATGTCAATAATGTTGAATTTGTAACTAATATAAAATCAGAAGATAAAGTTATTAATATATTGAAAAGTAATAATGATAAGATAAAATCAAATAAGCTTAATAAAATAAGTATAAAATTAAAATGTAATGAATGTTACACTGTAAGTAAAAACAATGAAGAAACCAATCAGTTAAAAATATCAGACTATGAATATGAAGGAGTTTTAGATTCATCAAACCAACATTTTATATCAAAATATGTTAAAAACAATTATAATTTAATTAAAAATACAGCGTTGAACCAAAACACATTAACTGAATTTCAAGAAAATGAATATTTGTCTAATATGAAAGAATATTCAGTTCAAAATAAGAATAGTGAAGAATTAAGTTTTGTATCAAATATATTTTATAAGACAAACTTTGCTGTAGAAACTCAACTAAGAGAAGATTACTTAAATTCTAATAATAAAATAACTCTTGATTTGTATATTGATCAAGGAACTAATGTTAATAAACAAAAGATCTTTGATAGTAAAAATGGTTTTATAAACAAAGCTAAATATAATAAAGGAAAAGGAGTTAAACTTAATTTACCAACTATTAAGTCTCATAGAATTTTTAATATTAATTCTCTATTATTAAATAATAATTTTCAAATAGAAAATGGTAAAAATATTAGAATTTTTAGCATGTATTTAAAATCTCCGTTATGTAAAAAAAATGTTGTAAAATATTATAAAAAATTAGCTCATGCTAGTAAAAACAGCAATAAAATTGTATCATGGTATAAAGTATGCAAAACCCTTTTAAAGAATAATAAAGATTCAGAATCTAAAATCATTAATAAAACCATATCATTACATTTAATGGACATCAATATGTTGGAAAACTTATTGAATTTTACATTATTTAAACCACAAAATTACAATAAAAATTGGACTCAAATTTTATCTTTCTTAAGAATTAGTAGATCAATTTTATATGATTTGTTAATTCATAGTGATAAATTATCAAAAATATATATTTCATCATTATTGTTAAAAAAAAAATTCATAAATGAAAACCAAATTTCAAAAGTTAAATTCAATTTTGAACTGAATAAATATCATGAGTATAATGATAATTTAACATATTTATACAGAGAAGAATTCATTACTGACAACATAAAATATTGTTTATGCAATAAACTATTTATTAATAAAGAATATTTAAGCATCACAAATGAAAGAAAACTAAGTGAATCAATACAGATTTTTTATAGTTACTGTTCAAAGATTATACAAATCAAAAATACCCTTAAAAAAAAATTGAATATACATACTTTAACACAAAAAATTATTTATGAAAGATGCATTAAAAACTCATTAAATAAAAAGTTTTTATACTTACAAAAATCATTAAGTCAGATGTCAATATGTTTAAAGTTTGAAAATAATTCAAAATATTATTTTATAAAAAATAATTGTCTGAAAACTGATTTTAATTTTCAAAATGTAAAGTTCTCTACCTCGTTTAAAGTTCAAACTCCAAAGTTGTTAAGTTTGCAAAAATTAAATGGTGTTATAAATCTAGAGTACATTTTTTTATATATCAAAAGAAAAAAAAATTTGAATATAATTATAAGTTCTTCATATAAAGACAAAGAACATAATGTCTATAATTTTAAATGTCATTACTGCAATAAAAATTTTAGAAAAAGAACTTACATTATAAATCATTTACAAGTATGCCACTATTTTGAATGTAATGGCTGTCGAAGGGTATTTCAAAATAAATCTTATCTAGTAAAACATATTAAGTGCTGTATCAAAAGGTTGATGCATAGATCAAATAGTTATAGTAGTTATGTGAATAATCAATTAGAAAAGGTCGAACCTAATCATTTTAAAACATTTGATTTATGTCGACAAAATTCAAAAAGTAAAAAATCTTTGATCAAGCCTGTTAAAATATCTCATGATCAAAAATATAGATACATCTGTTATATTTGTAATGAAAAATTTAGCCAAAAATCATTATTAAAAAAGCATATGAAATTACACTTTAAAAGTAAAATAAAGTCAAGTAATGATAATGATATGGATAGTTTAGACTTAAGATTTGTTAATAATAAAATAAATGTTACTCATACTAGTCAATGTGATTTCCTTACCCTAAATCATAAAAATATTAATTTTAATTGTGATTTATGTTTCAAAATGTACCCAAATAAAGGTAGTCTTCAAAAATATATTACAAATGCAGATAATTTCAATTTTTTTAAGTGTAATTATTTCCAAAATAATATCAAATTGAAAAGTAATTTAAAAAGACACATTGAAGGTCATTTTAAAAACACATTTGTAGATTCAGATGTATCATCAAGAATACTAAATGTATCATTTAACACACTCTGTTACCTTTGTGGTGAATTGTTTCCATCACATTCTCTCAAAAGTATTCATATTACTAATATACAGTATAAAAGTTATGAAGAAGTACAAAATTCGATGTTAAATGGAAAAAATTACTACAACCTAGAATCTCATCAATGTAATTTTAATAATTCAAAAGAAAATGAAAAATATACTGATATTTCAAATAAAAATGTTAATTTCAATGCTGATTTTTTAGATTTTATCCATGTAATATCTCAAAATAATAATAATGAAATTGTTAAAAAAAAAAATGTGCATGCTATTGATATAACTACGGATCTCAAAAAAAGTGTAAACGAACAAATTATTGATAATGAAATAATTAAAAAAAATATATTAGCTATTACTTCAATTTCTAATTGTAATAGTAGTTTTTATGAAGGAATTGACAAATCTAACATTCTGAATTGTTATAAATGTGAAAAATCATCATTCCAAAACAACAAAGTTTATGTAAACCATTTATCTAATACTCATATCAATATAGGAAAGCTTTTAAATTGTAGTATATGTAAAAAAAATGTTAAAGCAAAATCGAAATATAAGAATAATGTTGATTATAATTGTGATATTTGTGGATTAAAATTAACTCAAAAAAGATTATTAAAACTTCATAAAATGAATCATAAAAATGAAAATAATTTAGTTGAGTGCAAATATTGTTTTAAAAAAATGCCTGCTTTCAAAATAAATAAACATGAAATTGTACATAAAAATTCTACCAAAAAACTATGTACCATATGTGGAAAATTTTATTCGAGAATTTACTTCAAAAAGCATTTATTGACTCATGATGATTCTTATCGATTAATTTGTCCTCATTGTGGTAAGAAATTTGTGTACCATAAATCTTTACAAAGGCACTTATTATTATTTACTTTAAATAAAAAATGTAACTTAAAAATTGCTAAATTAAATAATAAATCATACCCAAAAAAAGTTAAGAATAATTTAAATTGTCAAGAAAAGAAATATCAGTGTAAACTTTGTAATACAATATTTTGTGAAAAAAAAAAATTTCAAGAACATAAACTCTTACATCCTAATCATAAAATGTTTGATTGCAATGTCTGTAGTAAAACATTTAGCAAAATATTTGAATTAAAAATGCATAAATTAGAACATGATGGGGAACATTTGTATAATTGTGTTGAATGTAACAAATCATTTTCAAGATCATCTAAATTTAAGATTCATATGAAAATTGAACATGGTGGACGTATATGTGAAATTTGTAATATTGAATTTAATTACATGGCAGATTTTATGATGCATCAACGTGTCCATAAACTAGGAAACAAGTTTGTCTGTGAATTATGTGATTCTGGAACATTTAATTTTAAAATGGAGTTAAAGTATCATATTAAAATTTGTCATGGTGAAAGTTTAAATTGGTTTGATGTGTAA
- Protein Sequence
- MKRNKKKILKKKLRLEPYVLLERIDTSNIKIGQIWNNQKKPKLFHEPVVLLDHIDLDNLKIKKNFGNSNELLLDNRLNLYLSKKNINCFRPFVLLERLSPKVLNKYLNPSLGLNKEKIYVNNVEFVTNIKSEDKVINILKSNNDKIKSNKLNKISIKLKCNECYTVSKNNEETNQLKISDYEYEGVLDSSNQHFISKYVKNNYNLIKNTALNQNTLTEFQENEYLSNMKEYSVQNKNSEELSFVSNIFYKTNFAVETQLREDYLNSNNKITLDLYIDQGTNVNKQKIFDSKNGFINKAKYNKGKGVKLNLPTIKSHRIFNINSLLLNNNFQIENGKNIRIFSMYLKSPLCKKNVVKYYKKLAHASKNSNKIVSWYKVCKTLLKNNKDSESKIINKTISLHLMDINMLENLLNFTLFKPQNYNKNWTQILSFLRISRSILYDLLIHSDKLSKIYISSLLLKKKFINENQISKVKFNFELNKYHEYNDNLTYLYREEFITDNIKYCLCNKLFINKEYLSITNERKLSESIQIFYSYCSKIIQIKNTLKKKLNIHTLTQKIIYERCIKNSLNKKFLYLQKSLSQMSICLKFENNSKYYFIKNNCLKTDFNFQNVKFSTSFKVQTPKLLSLQKLNGVINLEYIFLYIKRKKNLNIIISSSYKDKEHNVYNFKCHYCNKNFRKRTYIINHLQVCHYFECNGCRRVFQNKSYLVKHIKCCIKRLMHRSNSYSSYVNNQLEKVEPNHFKTFDLCRQNSKSKKSLIKPVKISHDQKYRYICYICNEKFSQKSLLKKHMKLHFKSKIKSSNDNDMDSLDLRFVNNKINVTHTSQCDFLTLNHKNINFNCDLCFKMYPNKGSLQKYITNADNFNFFKCNYFQNNIKLKSNLKRHIEGHFKNTFVDSDVSSRILNVSFNTLCYLCGELFPSHSLKSIHITNIQYKSYEEVQNSMLNGKNYYNLESHQCNFNNSKENEKYTDISNKNVNFNADFLDFIHVISQNNNNEIVKKKNVHAIDITTDLKKSVNEQIIDNEIIKKNILAITSISNCNSSFYEGIDKSNILNCYKCEKSSFQNNKVYVNHLSNTHINIGKLLNCSICKKNVKAKSKYKNNVDYNCDICGLKLTQKRLLKLHKMNHKNENNLVECKYCFKKMPAFKINKHEIVHKNSTKKLCTICGKFYSRIYFKKHLLTHDDSYRLICPHCGKKFVYHKSLQRHLLLFTLNKKCNLKIAKLNNKSYPKKVKNNLNCQEKKYQCKLCNTIFCEKKKFQEHKLLHPNHKMFDCNVCSKTFSKIFELKMHKLEHDGEHLYNCVECNKSFSRSSKFKIHMKIEHGGRICEICNIEFNYMADFMMHQRVHKLGNKFVCELCDSGTFNFKMELKYHIKICHGESLNWFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -