Dvit017302.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Daktulosphaira vitifoliae
Gene Symbol
Hivep1
Assembly
None
Location
scaffold202:208196-221469[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 1.7e-05 0.0023 18.7 2.5 1 23 81 103 81 103 0.98
2 8 0.00025 0.034 15.1 3.9 1 19 109 127 109 133 0.92
3 8 0.00093 0.13 13.3 0.7 3 20 236 253 234 255 0.93
4 8 8.9e-07 0.00012 22.8 1.3 1 23 555 577 555 577 0.99
5 8 2e-06 0.00028 21.6 3.1 1 23 583 607 583 607 0.92
6 8 2.3e-06 0.00033 21.4 0.3 2 23 835 856 834 856 0.97
7 8 5.1e-05 0.0071 17.2 3.5 1 22 862 883 862 886 0.91
8 8 0.0035 0.48 11.4 1.4 1 23 906 930 906 930 0.92

Sequence Information

Coding Sequence
ATGTCTTTGGAATGTGAAATAATGCCGCGAAAACGACTGTCGGGGGACCCCCCTGTTCATAAATATATAATGTGTCGTACCGAGAAACCTGCTCCTCCTTCGACTCCGTTGTCGGCAGGCAATTATTTACACAAGAAGTTCAAAAAAGTGGCCACGGCTGACGATTGTTCCGATGCTGCTGTTGCTACTACGCCTGCTGCGTTACCAACAGACGAACATAACGTGGAAGGTGTTTGGAGACACAAGTGTCCTTACTGCAAAACTGTGTGCACCAAGCCCAGCGCTCTTGCCAAACATTTGCAAGTGCATTCCGACGAGCGACCGTTTCCGTGTGAAACGTGTGGCTTTGCATTCAAAACAAAAAGCAATCTTTCAAAACACTGTAAATCTCAGTCGCACACCGAAAGACTCGCCAAAGAAGAACCGGAAGTGGCGAAGCCCAAAATTTACAAACCCAAATTTCGTACTGTTTCGTTGTACACTAAACTGGAAAATAACGCGATTGACAATCCTGAATCACAATTGCCCAACAATACTCCCAAGTATGATTCATCACAACCATTAAACCTATCTGTGACTTCTGTCAAGAAAAGTTCAGAAAGAGATATTCCTCCAGTTGAAAACGGCAAATCTGAATTAAAAGGTGTCTATAAGTTATTGTTGAATCAGATAGTCAAGTGTAACGTGAAGAAATCGCATCTTTTTTGCGAACAGTGTGGCTTAAAGTTTAACAATCTCGAAGACTTGACTAGGCACGTATGCGATAAAAGTCCAACAAAACTTCATAATGCCAAGACAGTCGTCATGCCTCTACCGTCTCCAGGCCCTTTATTGGGTCGAACACCTCTCGTTGAATTCCACCGACCCAAGGAGCCGGATACGCCGACAAAGCCCCCAATGTTTGTTCGTATGGACGACATCGGACAACAGCGTGGTATGCTTACTATTTTGCAAGGTGGAAGAGCTGTACCATTTGTCCCTGGAATACCTGGTCCTCATACAGCTATTCCCCAACAAATGCGGTCTCCCTATGAACTGAAGCAAACCGAACCTCCCCCAGCAAAGAAACCAAAATTAGAAGAAGAATTTGTCATTTCTACTGCGCAACAGATTACAAATACCTCTGTAACAACTACAACTGTAGTAGCTCAAAAATTTGTACGTCCAACATCATTGGCTTTTAAACCAGGAACTTTTAGTACAAATAGAATGTTGCCTGTGGTTAGTCCAGATACACCCAGACCAAAGAAAAGTTATCAGCAGCTATACTTAAATGGGCATGCATATACATATCTTGGTCTCAAATGCTCTACAAGAGTATTTTACTGTACATTGACTAAATGTCAACCAACATACACTATCCTTCCAGAAGTTAACAACATATCTATGTACTCTAATTGGAAGATTTGTTCTGATGTGGGTAATAACATGCTTGGTATACGTGGTATGGATTTCTATGATTCAAGTCAACGAAATCATAGATATACATTAGCTGGAAAATCTCATGACTATTTAGTTGCTCATTCTTCTTACAAGCACCAAAAGACTCCTGAAAAGTCCAACAAAATAGAGATATCATCAGCTGGTAAACTAAAGATATGCCCGGGTGGTTTTGAGTCCAATGAAGATTATGTGTATGTAAGAGGTAGAGGGCGAGGGCGATATGTTTGTGCTGACTGTGGAATTCGTTGTAAAAAACCATCAATGTTAAAAAAGCATATCAGAACCCATACAGATTTGAGGCCTTATACATGTACACAATGTACTTTTAGTTTCAAGACCAAGGGTAATCTTACGAAACATATGAAATCAAAAGCTCATTTTAAAAAAGGAGTTGAACAAGACTTAAATCAATCATCATCTGATGAAGTGAAACAGCTAGATTCAGAAGATATGGAAGATTATTCTGAAGATAATTTGGATGAAGATGATGATGTTGATGAAGAGGAAGAAGATGATGATATATTGGATAGACTTAGTTGGCGTAAATCACAGTCTGATTTTGATGCCGCACGTTCTTTATTAAGGCTTTCACAAGTAACTCCTTCTCAAATACCTCAGTCAAATCATGCTAAGGCTGGTATTTTACCATATGACCATAGGCCAGTATCATATCCATATCAATCTCCTTTACCATTAACAGAATCTGAGATGCTAGGAAATAATTTACCTGAGAAACAAATAAGTTTATCTGCACAACCATGTAATTACTCTGCAGTTTCATCAGGTCTTCCTACATCTTCCCCTGACACAATTCCAGCTACCCTTCAATCTAGACCTTCAGATCTCAGGCAGTTTAATTCAGTATCCAATAATAATCAAAAAACAAATGGTAATAAACCTATAGATTTATCGCGTTTTGGAAATAATTTAGAAAGTGATCATGGTAATAAATTACATACAATCATTTCACCTCCAAGAAAGCCTAAAGCATTGTTTAGACAACCAACTACAAATGGTCCATCACAAAAATATACAAGTATTTTGGAAGATGGGCGAAGTAAATGTATGGTGTGTGATAAAGTGTTCAATAAACCCAGTCAATTACAGTTGCACATTAATATACATTATTTTGAGCAACCATTTCGCTGTGAAACCTGTAAAGAATCATTCCGGACTAAACATCTTCTGCAAAAGCATTTAGATTCTAATTCACACTTAAATAAAACAAATATGATTACTACCCAAGGGCCAGTTATTAAAAATCCACGACCTTTTGAATGTGCTGATTGCCAAGTTGGTTTTCGAATTCATGGACATTTAGCAAAACACTTACGTTCAAAAATGCATATCCTTAAGTTGGAGTGTCTTGGAAAAATACCATTTGGAACATATGCAGAAATTGAAAGATTGGGACTAAATTTAAATGATATAGACACCACAGATTGTGATAGTGCTCTGAAGAGTTTACAAGCCAGTCAAAAAGCAGTTTAA
Protein Sequence
MSLECEIMPRKRLSGDPPVHKYIMCRTEKPAPPSTPLSAGNYLHKKFKKVATADDCSDAAVATTPAALPTDEHNVEGVWRHKCPYCKTVCTKPSALAKHLQVHSDERPFPCETCGFAFKTKSNLSKHCKSQSHTERLAKEEPEVAKPKIYKPKFRTVSLYTKLENNAIDNPESQLPNNTPKYDSSQPLNLSVTSVKKSSERDIPPVENGKSELKGVYKLLLNQIVKCNVKKSHLFCEQCGLKFNNLEDLTRHVCDKSPTKLHNAKTVVMPLPSPGPLLGRTPLVEFHRPKEPDTPTKPPMFVRMDDIGQQRGMLTILQGGRAVPFVPGIPGPHTAIPQQMRSPYELKQTEPPPAKKPKLEEEFVISTAQQITNTSVTTTTVVAQKFVRPTSLAFKPGTFSTNRMLPVVSPDTPRPKKSYQQLYLNGHAYTYLGLKCSTRVFYCTLTKCQPTYTILPEVNNISMYSNWKICSDVGNNMLGIRGMDFYDSSQRNHRYTLAGKSHDYLVAHSSYKHQKTPEKSNKIEISSAGKLKICPGGFESNEDYVYVRGRGRGRYVCADCGIRCKKPSMLKKHIRTHTDLRPYTCTQCTFSFKTKGNLTKHMKSKAHFKKGVEQDLNQSSSDEVKQLDSEDMEDYSEDNLDEDDDVDEEEEDDDILDRLSWRKSQSDFDAARSLLRLSQVTPSQIPQSNHAKAGILPYDHRPVSYPYQSPLPLTESEMLGNNLPEKQISLSAQPCNYSAVSSGLPTSSPDTIPATLQSRPSDLRQFNSVSNNNQKTNGNKPIDLSRFGNNLESDHGNKLHTIISPPRKPKALFRQPTTNGPSQKYTSILEDGRSKCMVCDKVFNKPSQLQLHINIHYFEQPFRCETCKESFRTKHLLQKHLDSNSHLNKTNMITTQGPVIKNPRPFECADCQVGFRIHGHLAKHLRSKMHILKLECLGKIPFGTYAEIERLGLNLNDIDTTDCDSALKSLQASQKAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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