Dvit009831.1
Basic Information
- Insect
- Daktulosphaira vitifoliae
- Gene Symbol
- L
- Assembly
- None
- Location
- scaffold216:541582-595711[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.3e-06 0.00032 21.5 1.2 1 23 131 153 131 153 0.98 2 21 1.2 1.7e+02 3.4 7.0 1 23 159 181 159 181 0.97 3 21 5.1e-07 7e-05 23.5 5.6 1 23 187 209 187 209 0.99 4 21 6.3e-06 0.00088 20.1 0.9 1 23 215 237 215 238 0.96 5 21 0.00035 0.049 14.6 1.8 1 23 255 277 255 278 0.95 6 21 0.014 2 9.5 0.3 1 23 302 325 302 325 0.97 7 21 0.0069 0.96 10.5 1.2 2 23 497 518 496 518 0.93 8 21 5.2e-05 0.0072 17.2 0.7 1 23 526 549 526 549 0.94 9 21 4.7e-05 0.0066 17.3 1.0 1 23 554 577 554 577 0.95 10 21 0.00047 0.065 14.2 0.8 2 23 628 649 627 649 0.96 11 21 0.022 3 8.9 3.4 1 23 653 675 653 676 0.96 12 21 1.8 2.5e+02 2.9 0.2 2 23 719 742 719 742 0.84 13 21 0.001 0.14 13.1 3.5 2 23 756 777 755 777 0.96 14 21 0.0019 0.27 12.2 0.3 1 23 787 809 787 809 0.98 15 21 0.55 76 4.5 1.8 2 23 817 838 816 838 0.96 16 21 0.0046 0.64 11.1 1.1 3 23 913 934 912 934 0.91 17 21 0.098 14 6.9 1.3 1 23 938 960 938 960 0.97 18 21 0.011 1.6 9.8 0.4 1 23 971 993 971 993 0.96 19 21 0.0024 0.34 11.9 0.1 1 23 1001 1024 1001 1024 0.97 20 21 0.59 82 4.4 0.3 1 23 1031 1055 1031 1055 0.94 21 21 0.13 18 6.5 5.4 1 23 1081 1103 1081 1104 0.94
Sequence Information
- Coding Sequence
- ATGTCCAGAAGGAAGCAAGCTACACCCCGCTCTTTGAAACATGGAAACCCTGACGCAGACGATACTATAGCAGATAAAGATCTCGTACCGCCTTTATCATCTGCCGGGTCGGTTGGTTCTAAAAGCGACGACGACGAAGGAGATGAAGACGAAGAAGAAGAAGAATGTGTGGATGACGATATGTCGGTTAGTTTCTCAGGAGATTCAAACCAAAGTTTACTTTCAGAAGCCTTGAGTGGTAACGGCGAAGTGAGTACGGAAGAGGCGGCTTCGTCGTGGAGCTCGGCCGTGTCGGAGGACCACACGTCCCCGGACAGCTGCGCGACATCCAACAGCCGGCCCGGTTCCACGGTCGACCGTTCATCGTACACTACGGCCGACCCCAATCCGTACGCTTGTCAGTATTGCGATAAGACGTTCCCCCGCGGTAGTTACCTGAAGAAACACGAGCAGACTCATGGAGAATCGATGCCGTTCAAGTGTCAATTCTGCCGGAGACTGTTCAAACACAAACGCAGCCGAGACCGGCACGTGAAATTACACACAGGCGACAAGAAGTACAAGTGTACTCAATGCGACCATGCTTTTTCAAGGAGCGATCACTTGAAGATTCACATGAAAACACACGACAATCAAAAGCCGTTCCAGTGCACGGTCTGCAACCGGGGCTATAGTACAGCGGCCGCCTTAACGTCGCACATGCAGAACCATCACAAGAGAGCGGCCGAGAGAGAAAATTCACCGCAAATAGCTGGTCCGTCTTACAAATGTCTTCAGTGTACACAGATATTCCGGAAACCCGACGAACTTCAGAATCATACTGCTAATCATCATTTAGGCGAACAGTTATCTTCAAATTCCAGAAGCTCAAAACGAGCAACGCCACCAAAAACTCCCAATCAGTACATTTGTGTATATTGTACTAAAGAATTGCCGAGTATGGACGCTCTGCAGCAACATTTTCAAACCAAACATGCCGCATTTTTAAATGGTAAACCTCATGAAGACTTTACATCAATTTCTTCTGGATTTCCGTGGTTGAACTTTTCTGATTCACCTCCTTTAGGTCTACCCCCATTCTCGTGTCGATTGTGTATGAGCCAATTTCCATCAGTTATTTCTCTTCATAAACATTTTACAACTGCGCACTATTTCAACTCCGTCCTAAACAACAACAATAATAACAATAGTAATAATAAAGAAACATCGGCATTTAGCTGGTCGAACGGATATCACAGTTTTTTATCGGAAGACAATGGCCAGACAGGTCCTACTGATTTGTCAATATCAAAAAAACAATCGGGAAAACACAAGTCAGTAGATTCTCGGAATCATCAAAGTAGTAAAAAGTCTCGGTCTTCACCTAATCACGAACAATCACTTCAAACGCTTACGGACCGAAATATATATTCTTTAAAAACCGAACGCTCATACGACAATAAACGCCAGTCCAATAGACCTGCGGTCGATGTATCCAAACTTCAGTTGCCTTGCCCTCACTGTCATTTAACGTTTACTCTATTTGAAGACTACCAACAGCACGTAATCGGTCATTTCTTAACGGCAGCTGCCGAATACTCGTGTCAAGAATGTTCCACATCATTCACCACGTCTGAGAATATCCAAAAACATTTAATAGAAACGCATGCTCAAAATTTTTATAGATGTATGCTGTGCAAGGAAGTATTCTCTACTAAATCTGCATTAAAGGTCCATTTTAGTATGAATCATGGGAGTGAACATAGAATGTTCCGTTGTAACAACTGTACAGGAGTATCTAGGCCATTGTTTCAGTCGGAAATCGAATTTATCGACCATTTAAGAAGTACACATTATACCGCCAAATCTCCCCCATCAGTCCAAAATAATAATTTGATGTTAAGGTGTCTAGTATGTCATGCTACATTTAATACGCAATCGGACATGGAACAACATCTAGCAAGCCACTCTAAACAGTTTCAGTGTCAATATTGTGCGGAATCATTCCATATCGAGTTTTTATTAGATAGACACATACAAACACATCACAATTCGCCTATACTTAGTCACCTTAACCTAAATCACAGAGAATCTCCAAATTCTGCATGCCCTTCTCCTACTTACTTGCCTAGACAAACTGATGGTAATAAACACTCTTTAGATAATGGATCAAACACATGTGATATTTGCGAAAAAAATGATTTTCGGAATGAGCTAGACTTGATTGCACATAAAAGAAATGTTCACCAAGTAAAACCTACAAATTTGTCGACAAAAATGAGCTTACACTGCGCTTACTGCAGTGAAAATTGTAAATCCAGAGCAGAATTAGAAAATCATATGAAAACTCATTCGCAACAAGGTTCAAATGCAGGAAAACACAAGTGTAATATTTGTGACGAAATATATCAATCTGCTATCAGCTTAGCTGAACACAAGCTAACACATTGCAAGGTGGTTACAAGTACTATGTGTAGTCACTGTAAAATGATTATAGACAGCGAAGAACAATTTTATCAACATCTTCAAAAACATTGTAATCCTATTAACATAAATGGAAGCCATTTGACATTCCCTACTTCTTGTATAATATGTAGGCAAACCTTAGTATCAGAGATAGAAGTTAAAGTGCATATTAACTATCATCTAACTAGACTCAAAGAACCTCCTGTAATCTGTAGTACTTGTAATCGATACAAGAATTCTCCATCATCACAGTGTACCCATTGTAATTCATTGAAAAATTCTTCAGAGCGTTGTATCGATTGTGGAACTTCATTTGAAACTTTTGGCTCATTACAACATCATTTAACTTCGGTGCATAGAAAACCGTTTCATTGTTTTAAATGCAAGATTGGATTTGAGTCTCAACAAGAAGCTACAATTCATCTTGGTACACATCTAGCAACTTTAAATGGTTCAGTTGATGGATTCGAATGTGGTCTTTGTCCGTGTGTATTATCCAATACCAATAGTCTTCAGACACATTTAATTGAACACACGTTCGCCGGATGTAAAGCCTTTACCTGCTACTTATGTTCGGCTATATTCACTGTGCCAACGGGTCTTCAAGTTCATATGTCAGTCGACCATTCAACCGAAACACCTCCATATGATTGTCCAAGACCTAATTGTCAAGCTAAGTTTTTCTTCACAGCCGAATTAGATCGTCACACTTTGGAACACCAAGGGCAAGATGTATTGGCAAACATGAACTTTTACAAATACCAAAATAAATTTATGTCTATTTGTGAAAAAATGTTCAAGTGTACTGAGTGCTATCAAAGTTTCATGACTCAAATCGACTTACAATGTCATATGTACGATCACCATAAAAGAGAATTACCCATAGTATCAGCTTCAGAACCAATTAATGGTGTTAAAAGAGAAAATATTAAAACTAAAAACAGTGATGAAATCGACAAAGGTGAGAAAGACACTGAGACATCTATAAAATTAGAAAATCATGACGAAATAAACGTAAAAACAGAAAATGAAAAAAATGACGAAGATGATGACGAAGAAGAGCTTATTGATGTTGAAATCAATAATCGCGAAACAAATGAAATTGATTCTATTGACGATGAAAAAGCCAATTAG
- Protein Sequence
- MSRRKQATPRSLKHGNPDADDTIADKDLVPPLSSAGSVGSKSDDDEGDEDEEEEECVDDDMSVSFSGDSNQSLLSEALSGNGEVSTEEAASSWSSAVSEDHTSPDSCATSNSRPGSTVDRSSYTTADPNPYACQYCDKTFPRGSYLKKHEQTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERENSPQIAGPSYKCLQCTQIFRKPDELQNHTANHHLGEQLSSNSRSSKRATPPKTPNQYICVYCTKELPSMDALQQHFQTKHAAFLNGKPHEDFTSISSGFPWLNFSDSPPLGLPPFSCRLCMSQFPSVISLHKHFTTAHYFNSVLNNNNNNNSNNKETSAFSWSNGYHSFLSEDNGQTGPTDLSISKKQSGKHKSVDSRNHQSSKKSRSSPNHEQSLQTLTDRNIYSLKTERSYDNKRQSNRPAVDVSKLQLPCPHCHLTFTLFEDYQQHVIGHFLTAAAEYSCQECSTSFTTSENIQKHLIETHAQNFYRCMLCKEVFSTKSALKVHFSMNHGSEHRMFRCNNCTGVSRPLFQSEIEFIDHLRSTHYTAKSPPSVQNNNLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQYCAESFHIEFLLDRHIQTHHNSPILSHLNLNHRESPNSACPSPTYLPRQTDGNKHSLDNGSNTCDICEKNDFRNELDLIAHKRNVHQVKPTNLSTKMSLHCAYCSENCKSRAELENHMKTHSQQGSNAGKHKCNICDEIYQSAISLAEHKLTHCKVVTSTMCSHCKMIIDSEEQFYQHLQKHCNPININGSHLTFPTSCIICRQTLVSEIEVKVHINYHLTRLKEPPVICSTCNRYKNSPSSQCTHCNSLKNSSERCIDCGTSFETFGSLQHHLTSVHRKPFHCFKCKIGFESQQEATIHLGTHLATLNGSVDGFECGLCPCVLSNTNSLQTHLIEHTFAGCKAFTCYLCSAIFTVPTGLQVHMSVDHSTETPPYDCPRPNCQAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKFMSICEKMFKCTECYQSFMTQIDLQCHMYDHHKRELPIVSASEPINGVKRENIKTKNSDEIDKGEKDTETSIKLENHDEINVKTENEKNDEDDDEEELIDVEINNRETNEIDSIDDEKAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -