Dvit021952.1
Basic Information
- Insect
- Daktulosphaira vitifoliae
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold224:190321-200017[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.5e-05 0.0091 16.9 0.8 1 23 218 240 218 240 0.98 2 12 1.1e-06 0.00015 22.5 3.4 2 23 252 273 251 273 0.97 3 12 0.021 2.9 9.0 3.0 1 23 279 301 279 301 0.90 4 12 0.0002 0.028 15.4 1.9 1 23 307 329 307 329 0.98 5 12 9e-07 0.00013 22.7 1.9 1 23 334 356 334 356 0.98 6 12 0.00058 0.08 13.9 3.2 1 23 364 387 364 387 0.96 7 12 6e-06 0.00084 20.1 0.9 1 23 392 417 392 417 0.98 8 12 1.6e-05 0.0022 18.8 1.1 3 23 426 447 424 447 0.94 9 12 0.0011 0.15 13.0 1.4 1 23 455 477 455 477 0.98 10 12 0.032 4.4 8.4 0.5 3 23 491 514 489 514 0.90 11 12 2.3e-05 0.0032 18.3 2.5 1 23 520 542 520 542 0.95 12 12 0.025 3.5 8.8 5.3 1 23 547 570 547 570 0.97
Sequence Information
- Coding Sequence
- ATGTACGTGGAAGTTATTTCTGACTTGTTAGATCTGTTCAATAAGTTATTAAACGTTATGACTGAAGTAGGAGTTCTGGATTCATTTACATTTATGCATTCGGCTATTAAAATAAATTCAAACCATGAACAGTTCTTAAGAAGAATTCAGACTTCCATTGATGAATTAAAGAAATGGCTTACAAATGTTTGTACAGAATGGAAAGCTGAAGATTTAGCTTCACTGGGCAATGTAATTGAGCCACCATTAACCCCTAATACAATAGACATGAATCTTAGTGGACCTGATTATATAACACCATTAATTAAAGAAAAAATAGATTCTGTATTAGGTTTCAGAAACCCCGTTAGTCCAATATTATGGAGTGTTGGTTTAAGACCAATACAAGATAGTACATCAAAGGATGGTTTTGAAATAGATGATCAACAGTCACCAACTGACTTTATAGCACCATCATTTGGTGACTATGGAAGTCCATCATCAGACGCATGGAATGTTTTTCATGAGTCTGATTTTAATTTAGATCATGCACAATTGGATGAAAGAGGTCCACAAACTCCAAATATTAAATTATATAGAAAAGACGAATTAGACATTGCTCAGGATACAAATTCAAATGCTACTTATCAACAAAACAATTGTGAAATGACATTTATTTGTCACATATGCAATAATGAATTCAACTCATCTATAGAACTAGAAACACATTTGAAAATACACCAATCTGAATCAAACTATCAAAATGATCGTTTGACTTGTGATTTTTGTGAAAAAACTTTTTGTAAAAAGAGTAATCTTCGTGTTCATATGATGATTCATCAAAATATCAAGCCATACAAATGTTTATATTGTAATCAACATTTTGCTCAAAAAAGTACCAGAGATGTACACACAGTACAGCATACTGGTGATTACTTGTATAACTGCAGTATTTGTAATAAAGGGTTTGCAACCAAAGGAAAATTTAATTTTCATATGAAATCACATCAAGATGCAACATATGAATGTTTAGTGTGTAATAAACGATTTTCTACTCAACAATACTTGACATATCATATGAAAGTTCATCCAGATCAGGATACATTAGGATTTCACTGTGATATATGTAAATCAGTATTTAAACAAAAAAAATCTTTACTTGTACATAGAAAACAAGAACATCCATTTTCAATGTTTAAATGTCCTTCTGTAGGATGTGATAAAGAGTTTACAACAACTCAACTGCTTAATAGGCATACAAAAAGATTACATGAAAGTAAAGACAGAGCTGTTATTTGTTTAGAATGTGGAAAGTCTTTTTGTTTTCAAAATTATTTGCAAAAACATATTGTTAGAGTACATGGACCAAAGCGGTTACCTCATTTTAAGTGTCGACAATGTCCTGAACGTTTTGATAGTGACATAATGTTACATATTCATATGCAATCTCATCCTAAGAGTGAGAAGATTAAAGAATCTAAACGTATTTGCTGTCCCCGTGAACAATGTACTGCATCTTTTTACAATAGAGTAGCTCTTCGATATCATATTGCGGAAAAACACGATAATATATACCGATATGAATGTGAAGTATGCCAAAAAAAATTTGTGCGTAAAAGTCACTATAAATTACATTCTGCTATACATTTAAAAACACATTTTACTTGCAATATGTGTTGTAAACAATTTCGTAAAAAAAGCCGCTTAGCTACACACTGGAAAAAGGTACACCAACAAGAAACTTTTGATTTTGGGATGTTGTTCAGTGTTGAACCTTTTAAAAATTAA
- Protein Sequence
- MYVEVISDLLDLFNKLLNVMTEVGVLDSFTFMHSAIKINSNHEQFLRRIQTSIDELKKWLTNVCTEWKAEDLASLGNVIEPPLTPNTIDMNLSGPDYITPLIKEKIDSVLGFRNPVSPILWSVGLRPIQDSTSKDGFEIDDQQSPTDFIAPSFGDYGSPSSDAWNVFHESDFNLDHAQLDERGPQTPNIKLYRKDELDIAQDTNSNATYQQNNCEMTFICHICNNEFNSSIELETHLKIHQSESNYQNDRLTCDFCEKTFCKKSNLRVHMMIHQNIKPYKCLYCNQHFAQKSTRDVHTVQHTGDYLYNCSICNKGFATKGKFNFHMKSHQDATYECLVCNKRFSTQQYLTYHMKVHPDQDTLGFHCDICKSVFKQKKSLLVHRKQEHPFSMFKCPSVGCDKEFTTTQLLNRHTKRLHESKDRAVICLECGKSFCFQNYLQKHIVRVHGPKRLPHFKCRQCPERFDSDIMLHIHMQSHPKSEKIKESKRICCPREQCTASFYNRVALRYHIAEKHDNIYRYECEVCQKKFVRKSHYKLHSAIHLKTHFTCNMCCKQFRKKSRLATHWKKVHQQETFDFGMLFSVEPFKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -