Dvit015860.1
Basic Information
- Insect
- Daktulosphaira vitifoliae
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold25:591061-603607[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.018 2.4 9.2 0.2 5 21 14 30 11 31 0.93 2 10 0.037 5.2 8.2 0.5 4 23 42 62 32 62 0.93 3 10 8.6e-06 0.0012 19.6 1.4 1 21 95 115 95 116 0.95 4 10 5.7e-06 0.0008 20.2 2.5 1 23 124 147 124 147 0.97 5 10 6.8e-06 0.00095 20.0 1.3 3 21 189 207 188 208 0.96 6 10 8.3e-07 0.00011 22.9 3.9 1 23 216 239 216 239 0.97 7 10 4e-05 0.0056 17.5 3.4 1 21 331 351 331 352 0.96 8 10 1.9e-05 0.0027 18.5 3.8 1 23 360 383 360 383 0.97 9 10 7.7e-06 0.0011 19.8 0.3 1 22 402 423 402 423 0.95 10 10 5.7e-05 0.008 17.1 2.3 1 23 432 455 432 455 0.94
Sequence Information
- Coding Sequence
- ATGTCTAACAAAACTACTATGAAAAAACCGTTTGAATGCAATTGCGGTAAAAAGTATATTTCGAAGGATACATATGAAAATCATGTTAGATACTACTGTGGCCAAGAACCAAAGTTCTTTCGTCCTGATTGTAATTACAGTACTTTTAGAAAATACAGTTTTCAACGTCATTCAATCATCAAGCACGCTTCGCAACCTTTACCAACGGCCGCTATGGAAAACACAGCCTTAGCCTCTTCAGCTGTGACGGCTTCTATCGCCGATGGATCTACAGAACCGCGTTTCCCGTGCCCCAAGTGTCCCCGGAGTTACCGTAACCGAAATCACCTATACCGTCACGTACGCTATGAGTGCGATCGCATTAAACAGTATCGTTGCGGTATTTGCTTCAAAGATTTCTATAGAAGAGATAACTTGAAAACGCATATAAATTACAAGCATTTAAATAAGCTTAACCTGACTGCGACTCCGCCTCCTCCAGTCACCGATTCTTTTTTCTACCCTCGTTTTGCAGATGATGATTTTTGGAATTTGCCGGATCCTCGGCAATTAGTCAGGTCAGCCTGTTATCACTGTGGAAAGACTTATAGGTTCAAAGCAACTCTCAATCGACATATGAGATATGAGTGTGGTAAAGAACCTATGTTTGCTTGTCCTATGTGTCCTAAACGTTGTAGCCGAAAGTCCAATTTGCATCAGCACATCAGAATACGACATAAGTCTTCGGTGGCTGCATTATCCCTGGAGAAAGCGGAAACTCAGTTGCAAAGTTTACTTTTAATAAATAAATTTGTAAATGCACGCCACACGACAATTATAGTGTATGTATGTAGATTTGGATCTATTGTAGTGTATAGGGGTCAATGGAGAGAAGTAAAAAATTACTTGTTTTTAATTGAATTTATTTTTATCATTTCAGACGAGAGTGATTTTACAGTTACACCCGTTGGCTGGTCTGTTAATAGTCGCGATCAACAAAAACCTGCGACGTTCAAATGTAATAAGTGCACAAAAAGTTATCGCTATAAACACGGTCTTTGGAGGCATGTTCGATACGAATGCGGTAAAGAACCTCAGTTCAGGTGTCCGTTCTGTCCTAAGATGTGCAAAATCAAGACTAACCTTACTCAGCATATGAGACTTCGACATTTTCAGCTCATGAACTATGTGAATCCATCTTCCTCCCATTTTAGAGTGAAAGATCATGTGTGTGTCAACTGTGGAAAATCTTATGTGCGAGTGTATGAGCTAAAACGACATCAACGCGTAGAGTGTGGTAACAAGGAACCACTGTTCCAGTGTCCCGTGTGCCCTAAGAAGTGCCGTTACAAGTTTTCTTTAAAATCGCACGTGATCAATGTACACGATTTGATTTTGTTGTCAAAATGA
- Protein Sequence
- MSNKTTMKKPFECNCGKKYISKDTYENHVRYYCGQEPKFFRPDCNYSTFRKYSFQRHSIIKHASQPLPTAAMENTALASSAVTASIADGSTEPRFPCPKCPRSYRNRNHLYRHVRYECDRIKQYRCGICFKDFYRRDNLKTHINYKHLNKLNLTATPPPPVTDSFFYPRFADDDFWNLPDPRQLVRSACYHCGKTYRFKATLNRHMRYECGKEPMFACPMCPKRCSRKSNLHQHIRIRHKSSVAALSLEKAETQLQSLLLINKFVNARHTTIIVYVCRFGSIVVYRGQWREVKNYLFLIEFIFIISDESDFTVTPVGWSVNSRDQQKPATFKCNKCTKSYRYKHGLWRHVRYECGKEPQFRCPFCPKMCKIKTNLTQHMRLRHFQLMNYVNPSSSHFRVKDHVCVNCGKSYVRVYELKRHQRVECGNKEPLFQCPVCPKKCRYKFSLKSHVINVHDLILLSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -