Ccot005248.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- -
- Assembly
- GCA_001594065.1
- Location
- NW:1744924-1759937[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0027 0.17 11.9 3.5 1 23 234 257 234 257 0.93 2 15 6.7 4.1e+02 1.2 2.2 1 14 537 550 537 551 0.86 3 15 0.01 0.64 10.0 0.5 1 23 619 642 619 642 0.94 4 15 2.9 1.8e+02 2.3 2.1 5 23 649 668 648 668 0.92 5 15 3.7 2.3e+02 2.0 0.7 2 23 674 695 674 695 0.94 6 15 0.46 28 4.8 1.3 5 21 725 741 714 742 0.89 7 15 4.5e-06 0.00028 20.6 0.1 1 22 871 892 871 892 0.96 8 15 0.00019 0.012 15.5 0.1 2 23 899 921 898 921 0.92 9 15 0.0061 0.38 10.7 4.6 1 23 931 954 931 954 0.94 10 15 0.31 19 5.4 0.2 3 21 983 1001 982 1002 0.91 11 15 0.074 4.5 7.3 6.1 1 23 1043 1066 1043 1066 0.92 12 15 0.056 3.5 7.7 3.1 1 20 1115 1134 1115 1135 0.96 13 15 0.11 6.7 6.8 4.9 1 23 1143 1166 1143 1166 0.96 14 15 0.067 4.1 7.5 0.4 1 23 1230 1253 1230 1253 0.96 15 15 0.011 0.67 9.9 1.8 2 23 1284 1306 1283 1306 0.96
Sequence Information
- Coding Sequence
- ATGGCTCGAGTTCAACTATATGAAAGAGATGTGAGCGCTGTACTCATGTCTACAAATCTACTTGATATAGATATCCAAAATGGGATGAAGATTAAGGAAGAACCTATTGATACACCATCGAATTCTGATACAAACGAAGATGATACTAtagttaaaaatcattttagttTAATTGATCATgattatcatcattattggGACAAATCATTATCTAACAATGATAATTCATGTCAAAGCATGAATGACACAAAAAACAGACATTCATCGAATGGTCATGATGCATATTCAAACGACGTAACTAATACTGTTAATACAGatcgtaaaaatgtaaaaacaaagaaagaaatagataATATCTCATCACgttttaaaaaacgaaaatattctaatgaaatttttagcAATGAAGACACTAGTGCATTATGTTCAGTAACCGAAAATGTTACagcagaaaaaaaacaaagcatTACATTACATTGTAAGACAAAAATACcacataagaaaaaattaaaaaaggaagaatttCCATGTGACAtatgttttagaaaatttccCTGTCTTCAACATCAGAAACTACATAAACAATATTACGAACttgataaaagtaataagtGCAGGgcttgtaataaatatttcgtagCTAGTGATGAATCAAAGTCTTGTATGTGCTATATTAACATACGTGGACAGTTATCTTCATAcagttgtaatttttgtaatcgtatttttaagaataaattgctTTTACAATCCCACTTATTTCACGGacataatgatttaatatgtGTTAATGACACTTTTAAACATGAAACTTTCAAATTCGAGATTATTAGCGCAAGTACATCtcttaaagataatattttaaaaactaatgcaAATGAATCATTATGTTCAAATTTTGTTCAATCAAAAAACATGAGTACTTCAACAGTACttacaaatgatataaataaatctcgtGATGGTAATGTAATGAATGCTGAAGAATCAAGAACtgcaaaattattcaataatgaaatatcgCAAATTAAAAGGTTACGGCAACCAACATTAACGGAATATCTTGATCTTTGCAAAAAGAAAcacgatattaaatttaatccaaataaattaaatattatggaaGATGATTTTCCTACGTGCGCTTTGCATCATGATGATCAAATAGAAAAACTTTCAGAAGAACAAATTGGACAATGTAATTCCTCATCTACACAATTAGATAGTTTTTCAAAACAAACGGTATATTCTATTCAGAAACAAAGTACGAAACATGAAACGCATAAAAAGCCATTTGTAAAACTACATGCGGATGTTGAAATGATGAAGTCTTTTCTGGACAATCTTTCTGATGCGACTAtcgaagataaaataactGAAGATAAAacaagtaatattatttcatatgatCGTGGAATACCTTACTGTTTACGATCTTTAAATGGAGCCTCTTCTATGGAAGCAAGTTCTAATTTAAGAATAAGGAAAAGCAAAAGAGTATCTGAAAAGTTCCGATTTGAtacagaatttaatattaacaggaaagaaaatgtaaatgatTTAGAAAAGGTAACTTCTAAAGTGGATTGGAAAATTATTATGGCTCAGTTTAAATGCAAGAAGTGTACAATATCTTTAACAAGATGTGATGAACAACCAAGAAATTCTCATCAAATTTCTGCTTTTGAAGCTATGAAAAACACTTGTCTTACTCCTGAATGCAACGTTCAAGAAAATGATGTACAAAATGAAGTGAAGCTAAAAAATGTTGAGATTTCTTTGGAACGTTTAACAGTTCCaactgtaaatataaaagaaaaaacatcaAATGTCGAGGAACACAATGACAATGATTTTTTGTGTAAAGTTTGTGACGAGAGATTCCCTTCAAAATTGGCCAaacgtatacatattaaatcgTCTCATATAGCATACATGTCAAGCATATGTGGTGCACGTTATACGCTGAAGCATAAATTACTTCAGCATTATCTACACAAACATGTTTCTAAACATAACCAATGTTGTGTTTGTTATATGTTATTACCTGATTATAAAGCGTTGAAGCAACACTTAAATGGTCATTGTCTGAAGTATATTCAACGACAGGacgatcaatatttattagatattgaaTTAGAATGTAATCTGACCAAAAAATCTAAAGATTTTCATTGTGACGAGACATTCTTGTCGCGAACATCTTTAAAGAAACATCAAAGTCGTACGGTACAAGAagaaaatcaacaaaattCCATGGAAGAAGATCATTCATATTCGAaggatatttttgaaataaaaactgaGAAGACAGATGAAAATACACTTATATGTGATGAAGTAATTAATTCAGATGATTCGTGTAATCCGTTACATAacgattatgtaaaaaaaacgaatgaaCATCAAATATCACTTCATAGTGAAAAAGAACCGAAAATTAATGAAGTTAATGGAAACATTcttgttaataataacttaattaagGAGGAAATCAAAACTGTTAACGAATCACAACACTctgaaaaacttttaaaaaatgattccaTAAAAAGTAATCAAGATGTCACGAATAAGCAAATGAGTGACATTACaacaaaaattgtcaattttcCTTGCGATATATGTGGAAAGCAATTTCAAACTTCCAAGAATTTGGAGATACATATACGCAGTTTTAGTGTTACCTCAGATGTTTGTCCATTGTGTGGCACTGGATTTAGTTCTAAACGATTTTTGCAAACACATATCACTGCAGCGCACGTACCATATATTTCACAAACTTACAATTTCCATTGCGTATTCTGTAACCAaggtttttctaaaaaatatgatcttCGGTCTCATATATTACACTTACATGGTCAACAAGTACTCAATTCGCTCACGCGcgattctaataaaaatcaagAGAAATCTAACGAATCAATTACCCATACCGCAATATGTAATGTTTGTAATTTGGTATTTGAAACTCATGATCGCTACGTTGAGCATCGAATGTACTATtacaaaaaacatatattcacATGTTCATTCTGTGAACAAAACTTTCAAGGAATGTACATGTTTCATCATCATAATAAACTTAAACATTGTCCAGCGGATAAACGCAAGTCGTACAATTACATCTGCGACATATGTCATGAGGGATTCAATCATGAGtcacatttttattcacaCAATATGCATGTGCATTCGAATGAAGTGAATTTAGTTGAGACTGCTGAAGAATCTGAAGATATCAACAACAGAAGCCTGGATTATTCATTCAACGTCCCAAAACAGATTAGAAATTGTTCTACAGATCAAGGAAAACAAAATGAACACTTGTCCAATAAGTATACTTGTcaaatttgtcaaataaaatgtaaaaacatgGATCATTTCATAAAAcacaaagaattttattctaatgatGGCGATTTTAAATGTGACAAGTGTAATAGACGATGCAGAGCACTTGATTTTCTTAATCAACATAAGAAATTAACTCACTCTTGTTGGGATGTTGATAACGGACATTTATGTCAAATTTGTGGCGAAATTCTAGAAACTGCTATTTCGTTTATTTTACCAACTAGTCCCTTACCAACATTAAAACGTGTTATGCCAAAATCTGGGAAAAGCAATGAAATTACAAATCAGAAATCTGAATCAGTGAACAGTCATGTCATTGATCATAGTTACTCATGCCCATTATGTCCGCTACAATACCCATCTTTGGTGTTCTTCCATGCACATCTCAAATATGCTCATGCAGACTCCATCGTTTCCATTCGAACTGATGAATTACGAACTAATGAACCTGTCCCACAGGTGAATGAATCTCAGAAAAtctctataataaaatgtttattgtgtCCATGTACTTTCCCTAATGAGACTAAGTATAAGTGGCACTTGAGAAACTctcatacatattatatatatatcccaAACTCACAGCAGACAAAAGTTAACAACGTATGTATTCCTCCAACACCGataaacattaacaaaaaaggCACGGTTCTTGAAACAATTACTATAGATGATGGTGGTAATGTTAAGAATACATCAAATGAAGGAGCAGCCGAAGTTACAACACTTAATTACAAAGAACAGAATGATAAAATTGGTAAATTAAGAGTGAAACCTCTTGCAAAACTCATTGAAAATTTACCTATGGATTCTGCATCAAAATTCGTATAG
- Protein Sequence
- MARVQLYERDVSAVLMSTNLLDIDIQNGMKIKEEPIDTPSNSDTNEDDTIVKNHFSLIDHDYHHYWDKSLSNNDNSCQSMNDTKNRHSSNGHDAYSNDVTNTVNTDRKNVKTKKEIDNISSRFKKRKYSNEIFSNEDTSALCSVTENVTAEKKQSITLHCKTKIPHKKKLKKEEFPCDICFRKFPCLQHQKLHKQYYELDKSNKCRACNKYFVASDESKSCMCYINIRGQLSSYSCNFCNRIFKNKLLLQSHLFHGHNDLICVNDTFKHETFKFEIISASTSLKDNILKTNANESLCSNFVQSKNMSTSTVLTNDINKSRDGNVMNAEESRTAKLFNNEISQIKRLRQPTLTEYLDLCKKKHDIKFNPNKLNIMEDDFPTCALHHDDQIEKLSEEQIGQCNSSSTQLDSFSKQTVYSIQKQSTKHETHKKPFVKLHADVEMMKSFLDNLSDATIEDKITEDKTSNIISYDRGIPYCLRSLNGASSMEASSNLRIRKSKRVSEKFRFDTEFNINRKENVNDLEKVTSKVDWKIIMAQFKCKKCTISLTRCDEQPRNSHQISAFEAMKNTCLTPECNVQENDVQNEVKLKNVEISLERLTVPTVNIKEKTSNVEEHNDNDFLCKVCDERFPSKLAKRIHIKSSHIAYMSSICGARYTLKHKLLQHYLHKHVSKHNQCCVCYMLLPDYKALKQHLNGHCLKYIQRQDDQYLLDIELECNLTKKSKDFHCDETFLSRTSLKKHQSRTVQEENQQNSMEEDHSYSKDIFEIKTEKTDENTLICDEVINSDDSCNPLHNDYVKKTNEHQISLHSEKEPKINEVNGNILVNNNLIKEEIKTVNESQHSEKLLKNDSIKSNQDVTNKQMSDITTKIVNFPCDICGKQFQTSKNLEIHIRSFSVTSDVCPLCGTGFSSKRFLQTHITAAHVPYISQTYNFHCVFCNQGFSKKYDLRSHILHLHGQQVLNSLTRDSNKNQEKSNESITHTAICNVCNLVFETHDRYVEHRMYYYKKHIFTCSFCEQNFQGMYMFHHHNKLKHCPADKRKSYNYICDICHEGFNHESHFYSHNMHVHSNEVNLVETAEESEDINNRSLDYSFNVPKQIRNCSTDQGKQNEHLSNKYTCQICQIKCKNMDHFIKHKEFYSNDGDFKCDKCNRRCRALDFLNQHKKLTHSCWDVDNGHLCQICGEILETAISFILPTSPLPTLKRVMPKSGKSNEITNQKSESVNSHVIDHSYSCPLCPLQYPSLVFFHAHLKYAHADSIVSIRTDELRTNEPVPQVNESQKISIIKCLLCPCTFPNETKYKWHLRNSHTYYIYIPNSQQTKVNNVCIPPTPININKKGTVLETITIDDGGNVKNTSNEGAAEVTTLNYKEQNDKIGKLRVKPLAKLIENLPMDSASKFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -