Ccot002675.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- ZFX
- Assembly
- GCA_001594065.1
- Location
- NW:39136-74596[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.53 33 4.6 2.2 2 23 379 399 378 399 0.95 2 12 0.013 0.78 9.7 0.6 2 21 514 533 513 537 0.89 3 12 0.0024 0.15 12.0 0.2 2 23 552 574 551 574 0.97 4 12 0.041 2.5 8.1 1.6 1 23 593 617 593 617 0.93 5 12 0.023 1.4 8.9 0.4 1 22 663 684 663 684 0.95 6 12 0.00027 0.017 15.0 0.3 1 23 747 768 747 768 0.98 7 12 5.2e-05 0.0032 17.3 0.7 1 21 774 794 774 795 0.95 8 12 8.8e-05 0.0054 16.5 4.9 1 23 812 834 812 834 0.98 9 12 0.0045 0.28 11.2 0.1 1 23 839 864 839 864 0.96 10 12 0.0038 0.23 11.4 0.8 1 23 871 893 871 893 0.97 11 12 0.016 0.97 9.4 3.9 1 23 905 929 905 929 0.95 12 12 0.00074 0.046 13.6 1.2 1 21 935 955 935 960 0.94
Sequence Information
- Coding Sequence
- ATGGAAGGCTACGAAGAAGACGATGATACTCATTTCTGCATCAAGTGTAATTTGACAATTCATGGACTCGATAATTATGTGCAGCATCGTCGATCAGGCTGCCGATCATCGGATGCTAAAATCGTGATGGTTCATGAGTCACCGACAACGCCGACAACAGTATCCTATCCCGAAATTCTAAACGCAGACGCGTTCTTCAATTCATTAGAATTACAGAGTAATACCCGACGAGTGCCGACTTTGCTGGATAACAGAAAATTCAAGAAAgatgataaaagaaagaaggacCAGAAAGGTCAGGTGGATGGTGATGAGCCTGGTACGAAGGACAAACTTCACAGCATGTTACCCGCGGTCAGCGATCTGGACGAACCATCCGAGCTGTGCATCCAGTCCCTCAAGCAGACGACCCTTGAACGAAAGAGGCACGAGAATCAGCAGAGCTGGTTGGATGACCCCATTCTCGCTGACCTTTCTTTAGGGAATAGCGCGAGCAAGAAGCTGGCGAGATATGACTTCGAGTACGATGACTCCGAGGACGATATACTGGAGGAGGAATTGCAGGAAGATTCCTATTCGGATTCAGATGACGGCGAAAATCGGGAAGGTCCACCGCGAGATCATACCGGTGGAAAGTGGAAGCCCGGACTGGACGATTTGCCACAGGACACGCCGCATATGCATGAAGAGGACGCAGAGCCCGACAATGATCATCAGGAACATCCCCCGCCAACTTATACTGGCGGTAAATGGCGACCCGCGGAGACATCACAAGACGAGGAATACGAAAGCAAGGACACATCCGGACAGCCGCCGCCAGGATACACGCGAGGGAAATGGGTACCGGGTGCACGAACGGATATCGAGTCGGGATATTGGTGCAATCCTTGCGGCAGGAAACTTGCATCGCGATTGGTCTACAACAGGCATCTGCTCTCTGATTTGCACGCCAGGAGGAGCATTAGGGAACTTGACGGTGAAGCTTTCCATTTACGTGGAATAAATTCGCACGCAAGAGTGTCCAGAAGAATGTCCACTCGTACGAAGACTTCGAGGATGAAAGAAGAGCCCGAGCAAAGAGAACAACAAAAGAAAGTTAAGAAAGGTCTGCGTCGAAGGGAGAAGGAGATTCTCATGTGCGAGATGTGCCACACGCGCGTGAGGAAGTCTCAAATGGGTAAACATTTGCTTTCCCATTACCATTGCCGTGTGTCAGGTGTTCTCGTGAATCCACGCAATCCAAACGCACGCCATTTCCTTCTGGAGCACATAGCGAACGTGGTGCGACAAAGTCCCTTCCAGTGCGCTTCTTGCCGTTTTTACTGCAATACCGAGGAGACGTTCCTGCTTCATTGGCGTTCTGATCTTCACTCTAAGACCGTAGAACAGaTCGGCGGCAGTTGCCGATGCACTCCGTGCAACTACTGGTGCGCAGACAACGCGACAATGGAGTCTCACCTCTTGAGTACGAGTCATCGTGACGTAGTATTGATGATGAAGGGCTCTGTGCCGGTGGTAATTAGTCGTCAACGTTCGTTATCCTGCGGCAGTTGTGATCGGCAATTTCGATACAACTTCCAGCTGCGGTTGCACGCCAAAGAGACCGGTCACCCTGCGAGCCATACCGCATCGGACGCGTATCAACAGCGTATCAAGTGCAATCTATGCCCCCAAGTCCTCCGATCTTTAATCGCGTTTCAGCGTCATCAGCTGACTAGTCATATCACCAAGGATAAAGAGAAAAGCGAGGTCGTGACGGACGCACGACCAGCGCCGTACTTCTGTTCCTTCTGTTCGATGAACTTCACCACCTCCCAAGAAGCAATTCTGCATCGGCGAACCTCTAGTCACAAAGAAGCCGTGAATGCACGCAAGTGCGCGGAAGGTTTGTTAGACACTGCGCGGGAGTGTCCTCACTGTGATCAAAAGCAGCCAAATCTCACGGCGCACAAGAATCATCTTCTTCTTTGTCATCCAGAGCTTTGTCACAgATGTCCTCGATGTGGCACACTTTTCGCTCTGTCACAAGACGTCACCAAGCACACGCGAATGGGTAATTGTTTGATGAACGATCCACCGAACGCTACTGAAACCGAAAGTAACGAGAAAGAATGGAAATGTAAGGAGTGCATCTTTTCCACTGATTCCCAAGCCGAGTTTATTTTTCACGAAGCCCTGCATGCCGGTGCCGTtcaagaaaagaagaaagtgaCATCCGGTTCGAGCAAATTACCGAAATATAAGTGCCCGACTTGCGCGAAGATTTTCCCGAAAGCGTCACTACGAAACCACATCAGGCAGCACACCGGAGAGAAGCCCTTTCCCTGTGTAAAGTGTTCGATCTCATTCTCGAAAAGATCGCATCTCATTACTCATCAGAGGATATGCAACACTGCGTCGAAATCTCTGGATCAAACTGGCCGTCGGCGGAACTTTATCTGTTCGCATTGCAAAGAAGGCTTCTACACAAAACATGCCCTTCGACAGCACATGCTGCGACACGCTGGTAAGAAGTACAAGTGCGGCCTTCCGGGTTGTCCAACGATTCTTCGTACCGCGACCGAGCTCAAGAGCCATCGAAGATTGGTTCATGAGAACATTGAGAAGCAGTATTCATGTTCTGATTGCTCTTACGCCGCAAAAACGATAACGCAACTGCGCAGGCACAGAGTACGGCACGAAGATTCCGCGAACGTCGAGCAAATACAGATGCATTCCTGCACTTATAAAGGCTGCAATTTTAAGACGAGGCTCAATTCGAATCTGCGAAGACACGTACGACTGCATACAGGAGACAAACCGTACCAGTGCCGACATTGTCCCTATGCCAGCTATACTTTGGAAAATCTTCGGAAGCACATATTATCGACGAATCTACATCCTGGTAAAACGATCTACGAATGcgaattttgcaaaaagaagaaagaaaaacagatGGATCCGTTCTGCACGAATTTTGCCAAAGAACTTCGTGCTCACCTGCTGGAAGCTCACGCTGATGACTTTCCTACACCAAATGACGCGAACAACTATACGAATAACATTTTCAGATCAAATCAATAA
- Protein Sequence
- MEGYEEDDDTHFCIKCNLTIHGLDNYVQHRRSGCRSSDAKIVMVHESPTTPTTVSYPEILNADAFFNSLELQSNTRRVPTLLDNRKFKKDDKRKKDQKGQVDGDEPGTKDKLHSMLPAVSDLDEPSELCIQSLKQTTLERKRHENQQSWLDDPILADLSLGNSASKKLARYDFEYDDSEDDILEEELQEDSYSDSDDGENREGPPRDHTGGKWKPGLDDLPQDTPHMHEEDAEPDNDHQEHPPPTYTGGKWRPAETSQDEEYESKDTSGQPPPGYTRGKWVPGARTDIESGYWCNPCGRKLASRLVYNRHLLSDLHARRSIRELDGEAFHLRGINSHARVSRRMSTRTKTSRMKEEPEQREQQKKVKKGLRRREKEILMCEMCHTRVRKSQMGKHLLSHYHCRVSGVLVNPRNPNARHFLLEHIANVVRQSPFQCASCRFYCNTEETFLLHWRSDLHSKTVEQIGGSCRCTPCNYWCADNATMESHLLSTSHRDVVLMMKGSVPVVISRQRSLSCGSCDRQFRYNFQLRLHAKETGHPASHTASDAYQQRIKCNLCPQVLRSLIAFQRHQLTSHITKDKEKSEVVTDARPAPYFCSFCSMNFTTSQEAILHRRTSSHKEAVNARKCAEGLLDTARECPHCDQKQPNLTAHKNHLLLCHPELCHRCPRCGTLFALSQDVTKHTRMGNCLMNDPPNATETESNEKEWKCKECIFSTDSQAEFIFHEALHAGAVQEKKKVTSGSSKLPKYKCPTCAKIFPKASLRNHIRQHTGEKPFPCVKCSISFSKRSHLITHQRICNTASKSLDQTGRRRNFICSHCKEGFYTKHALRQHMLRHAGKKYKCGLPGCPTILRTATELKSHRRLVHENIEKQYSCSDCSYAAKTITQLRRHRVRHEDSANVEQIQMHSCTYKGCNFKTRLNSNLRRHVRLHTGDKPYQCRHCPYASYTLENLRKHILSTNLHPGKTIYECEFCKKKKEKQMDPFCTNFAKELRAHLLEAHADDFPTPNDANNYTNNIFRSNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423280;
- 90% Identity
- -
- 80% Identity
- -