Ccot008519.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- -
- Assembly
- GCA_001594065.1
- Location
- NW:1797211-1799916[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.4 1.5e+02 2.6 0.1 1 9 106 114 106 116 0.89 2 14 0.2 12 6.0 4.1 1 23 405 427 405 428 0.92 3 14 7.2e-05 0.0044 16.8 0.4 1 21 434 454 434 455 0.92 4 14 0.009 0.55 10.2 2.7 1 23 513 535 513 535 0.96 5 14 0.011 0.68 9.9 0.3 1 21 542 562 542 565 0.88 6 14 0.00049 0.031 14.2 3.8 1 23 571 593 571 593 0.97 7 14 0.064 4 7.5 4.0 1 23 599 621 599 621 0.96 8 14 0.00052 0.032 14.1 1.8 1 23 626 648 626 648 0.97 9 14 0.014 0.87 9.6 0.2 1 23 661 684 661 684 0.97 10 14 0.00032 0.019 14.8 3.9 1 23 700 723 700 723 0.95 11 14 8.1e-06 0.0005 19.8 0.5 1 23 732 755 732 755 0.97 12 14 1 64 3.7 1.1 8 23 765 780 764 780 0.92 13 14 0.066 4.1 7.5 4.2 1 23 785 807 785 807 0.91 14 14 3.5e-06 0.00022 20.9 0.7 1 23 811 834 811 834 0.98
Sequence Information
- Coding Sequence
- atgtcTCAAATGAAATGTGATACCTGCCGTCTTTGCGGTATTAAATTTGAGTtcgaacatttaaaatatatctttaatgaaACAACTGATTTAGTACAGATAATAAATGAAACTTTACCAATTAAGGTTTCACAAGATgactgttttaaatatatatgtttagaCTGTTATGATAAAGTTATCAATCATCATACCtttgttcaaaatatattagcaCACTCGAAGAAAACAGAAACAAAAACTGACTCTGTCTTTGAAATCaacaaaaatgagaaatttgaAGATGTGATTTATAAGTTACACAATGACATGATATATCCCTGTccaaattgcaataaaaacttaataatcttaataaacAGCAATTCTTCAGATAATAATCATGCATTTGATGTTTCATTAGTTCTTGTGAATCCAATAGAACAATTGcaagaaaataatcaaatatctgATGATACAGAGGAGTTTAACATATGTACATGGAAATCACGGGCATTAGATAAGTTATATAAAGTATCATTGAATCATGATATTGTTAATGAGAATACAACAAGTGATAATAAACGAAACATCAATAGGAAACTTAGAAGCTTGCAAAAAGATACTAAGGATACAGCTAACGTTATACCACATAATATTGATACATCATGTGAACTAAAAACTggtgaaaagagaaagagtcaACAAAGTATTTCtacaaaaacatttgttaGTCCTGCTAAGATACAGAAAGTAGAagtaaaattagataaaatggAACAAAATTACAATCATGAATTAGATAGTGATTACAGTACATTAAGTGTAGCTGACTTAATAACATTTCGATCGGTAGACAATGAATGTCTTAgtgaggaaataaaaaataaaggcaataatcttattaaatctcaaataatttggaaaaaattaaatgcaaaagaACAAGATGAATCCAATGGTAATTATGATAGATCAAATATGACTGACTTGATAATATTTCAGCCAGAAAACGATAATGTGGAATCTGTCTGTGATGATAAAGGAATTAAAGATAACAATGTAATAGACATGACGAAAATGGAAGAATGTGTTAACgaaaatgatacaaatgacatcaacatttcaaaaaataatgcaaaacaaGTATGTAATTTGTGTGGAGCTTGGTATATCTTACAAGATAAATATGAGTTTCACATGGAGAgacacaaattaaataaaatagataaatacgTTTGTACAAAATGCGataaagaaactaaaaatgaaaatttgttgTGGTGTCACTATCTCAACCATCACAAGAACTCAAACGAATTCCTCTgcttaaaatgtaaaaaagtatttgttaAAAGATCAAATTTAGTTGCGCATCAGAAAATATGCAAACTCTCTGATCACGAAGCAGTATTAAATGTTgaagcaaatataaataataataagaagcaaaaatgcaaaatctgcaaaaaattgataaaaaatgtagatcGTAATGCTATTGACAATCAAAGAAAATGTGCCtcttgtaaagaaaaaagacaaCCGCagcgaaaatattattgttcgGAGTGCAATAAAAACTTCATGCGTCAGGAGAGACTTGAGTTCCATAGGATGCGACATAATGAGAACATGAACGAGTTTATCTGCAGCACATGCGGGAGAGAATTCAGTGGGGAAAATTCTTTGTACGAACACTTTATCTTTGTGCATAAGAGATTTAGACCACATATTTGTGAAATATGTGGTAAGTCATTTCAGCTGAAGATACGATTGAAAGAACATCATCGAACACATACTGGTGAGATGCCATATCAATGTGAAATATGTGGCCTGCGATGTAGAACTACACATGCATTGGCATTTCACAAGAAATCTCATTTCTCCAATCGCCACACTTGCGAGATATGTGGCAAATCGTTTCTTAAGAAGCAGAATTGGAATGAACATCTAGAGAAACACTGGAAAAAAGACAAGAAAATATCACTTTCGCAAATATTTACATGTCCTGTATGCAACGATGATTTGCCAACCTACCGCATGTTAAGAACTCATATGATTACAAATCATAAGCTCGACCATCAAGATcccttaataattaatcaaaaaccATTATATGAATGCAACAAGTGTCAAGAAAAATTCAGACATCAAATGTCTCTCAAGTCACACAAGGACAGGGTGCACGAAGGCAAAACGGTACCTCTTTTATTTCAGTGTGATATATGCGAAATTACATTCAAATCCAAACGAGTGTTAATAAAGCATATTCGGAACGAGCATGATGAGAACAAgcataaacaatataaaaaaaaattcagaaataaagAAGATCTTGATCATCACGTTTCACTACACAATAGTAAGAAGTTTGCATGTGAGTATTGTAACAAGTTCTTCGAGCAAAAGGATGACAGGGACTTACATCACCATGAACACACAAACATTTACCAGTGCGGAGATTGCAACGAATCATTCAATAGTTCTGCTAGCCTCTTAAATCATCGCAAAAAGATGCACCAATCCGAGAATCcagaatacaaaattaaatgcgACAATgtacaacaaattaaaattcatttggACGAATctcaatga
- Protein Sequence
- MSQMKCDTCRLCGIKFEFEHLKYIFNETTDLVQIINETLPIKVSQDDCFKYICLDCYDKVINHHTFVQNILAHSKKTETKTDSVFEINKNEKFEDVIYKLHNDMIYPCPNCNKNLIILINSNSSDNNHAFDVSLVLVNPIEQLQENNQISDDTEEFNICTWKSRALDKLYKVSLNHDIVNENTTSDNKRNINRKLRSLQKDTKDTANVIPHNIDTSCELKTGEKRKSQQSISTKTFVSPAKIQKVEVKLDKMEQNYNHELDSDYSTLSVADLITFRSVDNECLSEEIKNKGNNLIKSQIIWKKLNAKEQDESNGNYDRSNMTDLIIFQPENDNVESVCDDKGIKDNNVIDMTKMEECVNENDTNDINISKNNAKQVCNLCGAWYILQDKYEFHMERHKLNKIDKYVCTKCDKETKNENLLWCHYLNHHKNSNEFLCLKCKKVFVKRSNLVAHQKICKLSDHEAVLNVEANINNNKKQKCKICKKLIKNVDRNAIDNQRKCASCKEKRQPQRKYYCSECNKNFMRQERLEFHRMRHNENMNEFICSTCGREFSGENSLYEHFIFVHKRFRPHICEICGKSFQLKIRLKEHHRTHTGEMPYQCEICGLRCRTTHALAFHKKSHFSNRHTCEICGKSFLKKQNWNEHLEKHWKKDKKISLSQIFTCPVCNDDLPTYRMLRTHMITNHKLDHQDPLIINQKPLYECNKCQEKFRHQMSLKSHKDRVHEGKTVPLLFQCDICEITFKSKRVLIKHIRNEHDENKHKQYKKKFRNKEDLDHHVSLHNSKKFACEYCNKFFEQKDDRDLHHHEHTNIYQCGDCNESFNSSASLLNHRKKMHQSENPEYKIKCDNVQQIKIHLDESQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -