Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: -
Assembly: GCA_001594065.1
Location: NW:76258-80674[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.056 3.5 7.7 4.2 1 23 396 418 396 418 0.98

2 10 0.5 31 4.7 3.6 1 21 424 444 424 447 0.96

3 10 0.00016 0.01 15.7 0.6 2 19 454 471 453 475 0.89

4 10 0.0001 0.0062 16.4 4.5 1 23 481 503 481 503 0.98

5 10 0.00098 0.06 13.2 0.1 3 23 511 532 509 532 0.93

6 10 0.13 8.3 6.5 1.8 1 23 539 562 539 562 0.98

7 10 1.1e-05 0.00069 19.4 0.8 1 23 566 588 566 588 0.98

8 10 0.00074 0.046 13.6 0.5 1 23 594 616 594 616 0.98

9 10 1.2e-05 0.00077 19.2 1.3 1 23 622 644 622 644 0.96

10 10 8.6e-07 5.3e-05 22.9 2.8 1 23 649 671 649 671 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.056	3.5	7.7	4.2	1	23	396	418	396	418	0.98
2	10	0.5	31	4.7	3.6	1	21	424	444	424	447	0.96
3	10	0.00016	0.01	15.7	0.6	2	19	454	471	453	475	0.89
4	10	0.0001	0.0062	16.4	4.5	1	23	481	503	481	503	0.98
5	10	0.00098	0.06	13.2	0.1	3	23	511	532	509	532	0.93
6	10	0.13	8.3	6.5	1.8	1	23	539	562	539	562	0.98
7	10	1.1e-05	0.00069	19.4	0.8	1	23	566	588	566	588	0.98
8	10	0.00074	0.046	13.6	0.5	1	23	594	616	594	616	0.98
9	10	1.2e-05	0.00077	19.2	1.3	1	23	622	644	622	644	0.96
10	10	8.6e-07	5.3e-05	22.9	2.8	1	23	649	671	649	671	0.96

Sequence Information

Coding Sequence: ATGGATGTGGTGGAAGAGGGGGAGGCGAAAATGTGCAGGCTCTGCGGCCAGTACGAGAAAATCTACATCGATGTATTCGGTGAGGAAGGTATCAAACGCTATCTTGGTCTCAAGATTCACaggaaaattaatatcttgATAGATGAGAAGGATCCTCTTCCCAAAGCGATCTGTGTTCAATGTCTGGGTAAACTTGAATTTGTTTGTGATTTTCAAGAGGAATGTCTGCGTACTCAACAAGTGTTGCGTGATCAGTATAATCTTCCACCATTAACAGAGTCTATAGAGGTAAAAGATGAAGAATCTGCATTGCTGGTGGGTACATCGTCGTCTGATAATAACAACAGTATTGAAAAAGATCTTAATTCCACTAGAAACAATCAAACTGAAGACATAGTCAAGGATTCACTAGAACAgcagaaaaagagaaatacagCTCCGAAGATTTTAAGAAGTCTTCGTAGTCAGCAACAAGCTTCCAAGTGCAATGATGAAATTGCAGGAAAAAATGTACAGACTCAAAGTACAGTATCATCACCGACTCGTTGGCTTAGAAGCAGGCAAACCGCAGATTCGTCTGCGGTAAACAACGAAAAGATTCCGATTGCAAATAGATTAAGGAGTCACGACAATGTGGAAACTAACATCAATAATAGTCGttctacaaataataatagcaataacGAAAATACAGATAAACAATGTTCaaagcagcaacaacaacaggATTCATCGACGATTCAGTTACCGACTTCAGCTTTGAATAAATTGTTGACAATTGTTTCTAGCTCTCCCGATATCGAGGTTTCTGTGAAGGAGACAAGAAATCGGAATAACGATGCCGAAGATATTAGTTTTACTGTGGAATTGTGtaagaaacaaaatgatgAGATATCGACAGCGCGAGCACGGGTTTTTCCTGATCAAGGCTATTGTCTAGTCGATACAGCAATCGTAGCTTTGCTGCAAAGCGAAAACAGAACAGAGGTGAACAGTATTGTCAATAGCATTCTTAGCAATACATCGTCGAAAAACAGTAGTGCTGTGgcaaaattgaaagatttagCGGAATTGGAACAGCGACTAGAAGCAACACAGAATCCAGAAGAGCTCTTTAAAATTGATGGTGAGGAGATTAAGGTAGATGATAATGTGGAGCATGTAGTAAATGGAACACAGAATGGTTATGCGTGTAAACTCTGTCAAAAATTCTATGAACGCCGAGATAAGTGTACGGTTCATGTGAAGACGCACCTCGGTATCAAGCAGTATACATGTGTCGTCTGCAACGCCAAATTTGTTTGCAAATCTGATGTGATGAAGCACATTCGATGTTCGCATACTAATCCTAGACCCATACAATGCCCTAAATGTCCTAAACGATTCAAATCCAAATTTTATCTAGCTGAACACGACAATGTTCATAAGGGTGTGCGACCGTACAGTTGTACAGACTGTGAACAGAGTTATCATCACAAGGTTTCGTTGCAGATCCATATGAAGTCACATTTACCACCGCAAAATTTGGCCTGCGAATATTGTGGCAAAGTCTTCCCATTTCGTACGCGATTACTCGGCCATATCGCAAGTGTTCATCTGAAAAAACGACGTAATTTTCGTTGTCGCTTTTGTTACAATCTTTACTCGAGTCTATCGGTGCTAAACGAACATATTAAAACTCGCCATGCGACTACATATACGTGTGATATATGTAGCAAGACTTTCAAAGTCGCTTCCAAGTATAAAGCGCACGTAATGCAGCACTCAAATCCTAAACCGTTTGTGTGCAATGTTTGCAATAATCGTTATGCTTCTAAAGCGTTTCTCAATGAGCATTTATTAAAGCATGAAGGTTTACGTAAACACATATGCCAAGAGTGCGGCGCGAGTTTTGCACAAGCGAGTCATTTGGCTGCTCATCGTCATGTACATGGAGAAAAGACGCACGCATGTCCGGAATGTggtaaaaaattcaatcgtCGTGACAACATGAAAGTGCACCGAAAACGGCATTTCGATGAAAAAAAGACTAGCAATCCTAGCAAACAGAAAGTTACATCCAACAATAACGATTTGACTGCTTTAACTACGTCTGTTAACGAGaagtaa
Protein Sequence: MDVVEEGEAKMCRLCGQYEKIYIDVFGEEGIKRYLGLKIHRKINILIDEKDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDQYNLPPLTESIEVKDEESALLVGTSSSDNNNSIEKDLNSTRNNQTEDIVKDSLEQQKKRNTAPKILRSLRSQQQASKCNDEIAGKNVQTQSTVSSPTRWLRSRQTADSSAVNNEKIPIANRLRSHDNVETNINNSRSTNNNSNNENTDKQCSKQQQQQDSSTIQLPTSALNKLLTIVSSSPDIEVSVKETRNRNNDAEDISFTVELCKKQNDEISTARARVFPDQGYCLVDTAIVALLQSENRTEVNSIVNSILSNTSSKNSSAVAKLKDLAELEQRLEATQNPEELFKIDGEEIKVDDNVEHVVNGTQNGYACKLCQKFYERRDKCTVHVKTHLGIKQYTCVVCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLAEHDNVHKGVRPYSCTDCEQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPFRTRLLGHIASVHLKKRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCDICSKTFKVASKYKAHVMQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQECGASFAQASHLAAHRHVHGEKTHACPECGKKFNRRDNMKVHRKRHFDEKKTSNPSKQKVTSNNNDLTALTTSVNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523594;
90% Identity: iTF_01476476;
80% Identity: -