Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: -
Assembly: GCA_001594065.1
Location: NW:196817-199460[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00082 0.051 13.5 0.7 1 23 351 374 351 374 0.96

2 10 3.8e-06 0.00024 20.8 0.5 1 23 380 402 380 402 0.99

3 10 4.1e-07 2.5e-05 23.9 0.7 1 23 408 430 408 430 0.99

4 10 0.11 6.9 6.8 4.4 1 23 436 458 436 458 0.98

5 10 7.4e-06 0.00046 19.9 0.3 1 20 464 483 464 484 0.96

6 10 0.02 1.2 9.1 2.3 1 23 493 513 493 513 0.94

7 10 1.2e-06 7.3e-05 22.4 0.5 3 23 521 541 520 541 0.98

8 10 4.7e-05 0.0029 17.4 1.7 1 23 547 569 547 569 0.99

9 10 0.0003 0.018 14.9 2.6 1 21 575 595 575 598 0.96

10 10 0.18 11 6.2 3.1 3 23 606 627 604 627 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00082	0.051	13.5	0.7	1	23	351	374	351	374	0.96
2	10	3.8e-06	0.00024	20.8	0.5	1	23	380	402	380	402	0.99
3	10	4.1e-07	2.5e-05	23.9	0.7	1	23	408	430	408	430	0.99
4	10	0.11	6.9	6.8	4.4	1	23	436	458	436	458	0.98
5	10	7.4e-06	0.00046	19.9	0.3	1	20	464	483	464	484	0.96
6	10	0.02	1.2	9.1	2.3	1	23	493	513	493	513	0.94
7	10	1.2e-06	7.3e-05	22.4	0.5	3	23	521	541	520	541	0.98
8	10	4.7e-05	0.0029	17.4	1.7	1	23	547	569	547	569	0.99
9	10	0.0003	0.018	14.9	2.6	1	21	575	595	575	598	0.96
10	10	0.18	11	6.2	3.1	3	23	606	627	604	627	0.95

Sequence Information

Coding Sequence: ATGATTAGCATGCAGCAGCAAACGAATTTGAATATTGTAACCGGGCCCGAGCAGCCACAGGAAGAAGTGCAGCTAACCGAATTGCGGCCAGTGAAGCTGAAGCGATCGTACATCAAAGAAAATTACGCAGTCTTTAAGGATATCGACGTGACTAATACGACCGATTCGACCGATACGATCGACGCGGTCGATGCAACCGACGCTCTCAAAGCACTCAGGAGTCTCTCGGGTGACTGCAGCGATGGCGATAACTTTAACCTGCGGAAATCCAACTTTTGCAAGAATGCCGAACAATTGGAACTTCGGAGCAGTAAGCATCGACGAGTGGAGGTTTGTCGCAAAAGAGCGAAAGTAACCAAGAATAATGCTCAAAATGTAGATTTTGATGAAGAGGAAAATAGCGAGGTGGCGAAGAAGAAAGTGCGTAACGATAGCAAGATCGTGAAAATACCGAAAAGGAAACTTACGAGCTCGTCAATCAAGAAGAAGGATAACGATTGGGAAAGCAATTATGGAATGGATGAGAAATCGATTAGGAAGGATACTACCGAATCTGATGAAGATGACGAGGACGAACAACTGTACTtggacttagaaaaaaaagactgTTTGAAGGATGAGGTTTACGTATATAGACAAGAATCGTTGGATCCATGCTCGAGCTCGGAATCAGAGGAACTGGATACGATCAATCATAAGGATTCTTGTGAGGATTATCCCACCACGGACGGAGAATTATTTAAtggaaagagaaaatttattgaagagACCTCTAACGCGGAtaacgagaaagaaaaattcgaATTCAAAACAGATGGCATTACTGAGAAAGAAATTCGTGAAAAGGAGCTGAAATTGAAGACCGATGCCATTCAATCGAATTATTTGCTGGAACGCGAAAATAATAACGTTGTGGGTTCTGACAAatcaaaaactaaaattatagaGCACATAGGCACCTCCTCCGCTGCTGCGGAAACGAAAAAGACGAAAAAGAAGCGAACTGATCAGACTAAACAACCGAAAGATCCACAGAATCCTCAAAAGAAATACTGCTGTGTTGTATGCGACGCGCGCTTCAAGGGTAGCGGTGGTTTGCGGAATCACTACAAAGTATTACACGGTGACGGACCGGCGTTCAAGTGCGATGATTGCGGCAAGGAGTTTCCACTGAAGGAACGGCTGAAACTGCATGTGCGCACACATACCGGTTTCAAACCGTACAAATGCCAGGAGTGCGATAAGAGCTTCGCACGGGGTGGCCAGCTGGTACAACATCGTCGCACGCACAGCCAGGTCAGGCCATTCCATTGCAAGCTATGCTCCAACACCTTCACATGCGCGGCCAATCTAGCATTACACTTGAAACGTCACAACGGCCAAAAGGATCATAAGTGTGACCTGTGCGGACGTGCTTTCGTGCGACGCGATGCCCTGAAGAAGCATCTGGAGTGCCTGCACCGTGACGTCAAGTCATTTCTCTGCGCGATCTGCAATAAGACCTTCAAGGGTCACCTACCGCAACACATGAGGACACATGCGCACGACCGTCCACATGGCTGTGCCACGTGTGGTCAACGATTTGCCCAGAAGTCCCAGTTAACCGTGCACCAAAGGACCCATTCCGGCCAGCGACCGTTTCGATGTCAAGTCTGCTGGCAAGCTTTCGCTCATTCGACCGCTCTGAAGCTGCATACTCGACGTCATACCGGAGAACGGCCGTTTAAATGTCCCGAATGCAATGCCGGCTTCACTCAACTGCCACACTGGAAGAAGCACATGAAGTGCATACATGGTAGGAACAATCCATACGGTTGTAAGCGTTGCAAGAGCTTTTTCAGGATTAAAAGCGACCTGGAAAGTCACGAGAAGATTTGTCATCCAGAGATGGAGGCGGAGAACGACGATGGTGATGTCCTCCCAGCCGATAAATCGCCTGGCTGCTCCGAGATCGTCGAGAAGACTTCTGTCACcgcaaaatataaactaatgaCGGTGGAGAAGATGCGGTTGCTGCTGGCAGTGCTGTTGAAGAAGATCAGCAAGCAGGAACGATTGGACGAGCTTGGCTTCGGTAAACGTCTTATCGACGACGTTCTTCAGGATTCCCTGAGGTATGCTGGCAAAGAACCAGTCATGAGGAATGGTTTGTCCGAACTTGAGGCTCTCACtcgaaatttagaaatttttctagAATGGACAGTACCGAAGAAGCATTGGGAGAATTTccgtaaaatgaaaaaatcggCCGAAGAGATTCTGGAGACGCTCACAGATACGTAA
Protein Sequence: MISMQQQTNLNIVTGPEQPQEEVQLTELRPVKLKRSYIKENYAVFKDIDVTNTTDSTDTIDAVDATDALKALRSLSGDCSDGDNFNLRKSNFCKNAEQLELRSSKHRRVEVCRKRAKVTKNNAQNVDFDEEENSEVAKKKVRNDSKIVKIPKRKLTSSSIKKKDNDWESNYGMDEKSIRKDTTESDEDDEDEQLYLDLEKKDCLKDEVYVYRQESLDPCSSSESEELDTINHKDSCEDYPTTDGELFNGKRKFIEETSNADNEKEKFEFKTDGITEKEIREKELKLKTDAIQSNYLLERENNNVVGSDKSKTKIIEHIGTSSAAAETKKTKKKRTDQTKQPKDPQNPQKKYCCVVCDARFKGSGGLRNHYKVLHGDGPAFKCDDCGKEFPLKERLKLHVRTHTGFKPYKCQECDKSFARGGQLVQHRRTHSQVRPFHCKLCSNTFTCAANLALHLKRHNGQKDHKCDLCGRAFVRRDALKKHLECLHRDVKSFLCAICNKTFKGHLPQHMRTHAHDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCQVCWQAFAHSTALKLHTRRHTGERPFKCPECNAGFTQLPHWKKHMKCIHGRNNPYGCKRCKSFFRIKSDLESHEKICHPEMEAENDDGDVLPADKSPGCSEIVEKTSVTAKYKLMTVEKMRLLLAVLLKKISKQERLDELGFGKRLIDDVLQDSLRYAGKEPVMRNGLSELEALTRNLEIFLEWTVPKKHWENFRKMKKSAEEILETLTDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -