Ccot001857.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- -
- Assembly
- GCA_001594065.1
- Location
- NW:5103737-5107030[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.029 1.8 8.6 0.2 3 23 450 472 449 472 0.94 2 10 0.0017 0.1 12.5 1.4 1 23 478 502 478 502 0.98 3 10 0.00016 0.0096 15.8 0.2 1 23 508 532 508 532 0.97 4 10 5.9e-05 0.0037 17.1 0.2 3 23 540 562 538 562 0.93 5 10 4.8e-05 0.003 17.4 1.7 1 23 569 593 569 593 0.97 6 10 7.3e-05 0.0045 16.8 0.6 2 23 601 624 600 624 0.95 7 10 3.5e-06 0.00022 20.9 2.0 1 23 630 654 630 654 0.98 8 10 3.7e-06 0.00023 20.9 0.5 1 23 660 684 660 684 0.97 9 10 5.2e-05 0.0032 17.2 0.9 1 23 690 712 690 712 0.99 10 10 0.024 1.5 8.9 0.1 1 23 790 815 790 815 0.97
Sequence Information
- Coding Sequence
- ATGTCTTGTAAAGGAGCTGCTACCATCACCGCATGTACGTCGAGACGACATAGTTGTGAGAGGATTAACTCCGAGAGCGAAGGAACGGAGTGCGCGCCCGTTGATGCCCTTTTTGCTTCGTCGAGAACGGAAGAGATCGGTAAGAAGGATCAGAAAACAAGAAGAAATGAGAATTGGCAACAAACGGTGACTGGAAAGGGTGTCGACGTTGTCGAGACAGTAGCTGACTTTGAGAAATGGCTTAAGATGGGTAGCACGGAACCACCGGTGCCATCGAGTATGGACTTGGACGCAACCAAGATGGTAGAGGGCGTAGACCGATATCTGGGTGAGGAGGTGCTATCACATGGCTGCTTTCTGAGCAAAGATCCGTATGGTCTGTCCATCGATATCGATTTGGCAGACGCCAAGAAACTTAATCTATCATCAAGCTATGATCCGATACTACAGGATCTGACACACAGTGAGAATCGATTGTTGGAGCCACCATGCGAGAAGGTCGATGAGTTTATGTTACCGGAGTTTCAGTTGGATCATTTGGATCCACTAGTGACCCTTACATCGGATGACATGATAGTAGCTGGTGAGATTCTACCGTCTGCGAGTAGCCAGTCAATGATAAGCGTAGAAAATCAAGATGTCGAACAAAATGCTCCAAAAGGAGTTCCAGTACAGAACAATGAGACATCCTGTGAAAAATCTACACAGGTCACTCTCAATCAGCTACCAGTGAATATAGCTGTAAACGAGATAGAAGATGCAAAGACAGAACAGGAAACTGTAGTACAATCTTCAGCAAGTTCCTCAGAGCTCTTTCTTGGGACTCTACCACCAATGGAACAGAGCTCATTGGATACCATGACAAATTCCATGGAAATAAATACACATGACATGGTAGTAAAACAATTGAAGAAGTCAAAACTCGAACCTCGTATTATCAAGAAACGTCGACAGATGATAACAGAGCACCTGGAGAAGAAACTCGATAAACATATCGATGGTAAAAGTTTAGCTGTTGACATAGACTCACAGGATGGCATGATGGCTGTGGTCGCTATATCTACTGACAAAATCTCCAACATGACACAGATTGTTATCAATACTGGTACAGAGAAACAGATCTATCAAGGCAAGACTTCGGAATTGATTGAAGCAACAGgtaattttccaaaattacCCAAGATAGATACTTCGGCCGCAGTTTGGAATGGCACAGTTGAGTACGGTTCCGATAGTAATCCAAGTAATCAATATGAAATTGTTATATCCAATGCACTGGAGGAATTAGGTATCACCGACGATAGTCTGCAGCCTTTGTGCGCCACTGAACACGACAAGGTGTGGCTCTGTCCACGAGACGGCTGCAACAGACAATTTGGTAGATTGTACACTCTGAAGGGTCATTTGTTGGCTCATTATGGAGTTAGACCGTTTAAGTGCGACTTTGAGGGCTGCACTTGGGCCTTTTATTCTGAGTTCAAGCTGAAGAGACACAAGGAGACACATCTGAAACGCAAGGATTACGTGTGTGAAGTGGAAGGCTGCAATCGTCGTTTCACTACCGTTTACAATCTATGGAGTCACGCGAAGTTGCACAATCGTCCTAACCGGATCGTGTGCCAGGTGCCAGACTGCGGCGAGAAGTTTCAGACGAAACGATCATTGGAACTACACATGAAGTCGCATGACCAACGCCATGCACCTTATGTATGTCAGCATGAGGGTTGTGGCAAACGTTACTATAGTAGCAACGCATTGACGTCACATCAACGATCACATAGCTACAAGGAAGTGGACATCAAGTGTTCATGGCCGGGTTGTGGCAAGATTTTCGACAAGCCTTGTCGACTTAAAGCGCACATGCGTTCTCATACCGGTTATAAACCCTATCCCTGTACTTTTCAAGACTGTAAGTGGGCTTTCTCATCATCCAGTAAGCTTAAGCGCCACCAAAAAAAGCACACGAACGAGCGTAAATTTGTATGCGACGTGCCGGATTGTGGCAAGGCATTTATGCGCTCGGAACATCTAAAGGAACACCGACTAACGCACACGGAAGGCCGCTTGTTTCAATGCTTCGTGTGTGATGCCCGATTCTCCGCCAAAAGTAGTTTATACGTACACATTAAGAAGCATCAGCAGACTAAGCCAGATTTGAACGTAACCAATGATATGTCCGAGAGCACTTCCACTAATCAAAAACGTACAAGAACAAAAGAATCTCATTATCCGCGAGTAAAGTCGATCAAGTCGAAGCGATTGAACACAGAACTGATAAATGCCGCGGAGACTATCGCGAAGGAGAACGATGTTGAGAAGCAGAGTACTAGTGCATGTTCCCAGGATGAGAATCAAATGGAGTTGCTGTATCGTTGTCCGATAGAGGTATGCGGACATTTAATCAGCAGCGAAATGAGTCTTCGTGAACACATGTTAAAAGTACACGGCATACAATGTGACGATTTGTTGACTAAACAATCTTTGGACGATGTCGACATagattatgttttatataccGTACACAATTCGCCAAGTTCATCCACTGTCATCGAAGAAGAACAGATGGTCATGTTGACTCCATGCGATGCTGTTATTCTTGATACTTCCTCATCAAAAATAGATCATTGTTTACCAGAACCGGAACCGCCACCTTTTAACACGTTACTGAAGAGCTCGGAACGGTTCCGAAATGATACACAAAATGAGCGGATCGACAAAGAAACTGTATCAATGAAGGAACAGGGTTCGGCGAGGACAGATCTAACATATTCCGATTGGTCTAAATTGAAGAAAGACAGTACATTGATGAATTCAGTAGTAACAGAAACGTCGGACGTTCTATTGAATACAAGTGACGATTTGAGCGAAGGTCTATTGCTCACAGAAGAGCTACCGTCGATGTACTATCAAGACGATGTGGCAGGTACGGAATATCAGGTGCTGTTATTAGATTCAAGTCCGCTCGAGAGTGCCATTAATTTGCGCGGTCTCGAGTGA
- Protein Sequence
- MSCKGAATITACTSRRHSCERINSESEGTECAPVDALFASSRTEEIGKKDQKTRRNENWQQTVTGKGVDVVETVADFEKWLKMGSTEPPVPSSMDLDATKMVEGVDRYLGEEVLSHGCFLSKDPYGLSIDIDLADAKKLNLSSSYDPILQDLTHSENRLLEPPCEKVDEFMLPEFQLDHLDPLVTLTSDDMIVAGEILPSASSQSMISVENQDVEQNAPKGVPVQNNETSCEKSTQVTLNQLPVNIAVNEIEDAKTEQETVVQSSASSSELFLGTLPPMEQSSLDTMTNSMEINTHDMVVKQLKKSKLEPRIIKKRRQMITEHLEKKLDKHIDGKSLAVDIDSQDGMMAVVAISTDKISNMTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTSAAVWNGTVEYGSDSNPSNQYEIVISNALEELGITDDSLQPLCATEHDKVWLCPRDGCNRQFGRLYTLKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTVYNLWSHAKLHNRPNRIVCQVPDCGEKFQTKRSLELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKIFDKPCRLKAHMRSHTGYKPYPCTFQDCKWAFSSSSKLKRHQKKHTNERKFVCDVPDCGKAFMRSEHLKEHRLTHTEGRLFQCFVCDARFSAKSSLYVHIKKHQQTKPDLNVTNDMSESTSTNQKRTRTKESHYPRVKSIKSKRLNTELINAAETIAKENDVEKQSTSACSQDENQMELLYRCPIEVCGHLISSEMSLREHMLKVHGIQCDDLLTKQSLDDVDIDYVLYTVHNSPSSSTVIEEEQMVMLTPCDAVILDTSSSKIDHCLPEPEPPPFNTLLKSSERFRNDTQNERIDKETVSMKEQGSARTDLTYSDWSKLKKDSTLMNSVVTETSDVLLNTSDDLSEGLLLTEELPSMYYQDDVAGTEYQVLLLDSSPLESAINLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128451;
- 90% Identity
- iTF_00182797;
- 80% Identity
- -