Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: -
Assembly: GCA_001594065.1
Location: NW:2539711-2544031[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.4 1.5e+02 2.6 0.4 1 12 108 119 108 128 0.88

2 12 0.015 0.93 9.5 1.9 1 20 239 258 239 260 0.95

3 12 4.5e-05 0.0028 17.5 1.0 2 23 265 286 265 286 0.97

4 12 0.0011 0.069 13.1 5.6 1 23 297 319 297 319 0.97

5 12 0.011 0.67 10.0 0.2 1 23 338 359 338 359 0.80

6 12 0.00026 0.016 15.1 0.1 2 23 365 386 364 386 0.95

7 12 3.3e-05 0.0021 17.9 4.8 1 23 461 483 461 483 0.99

8 12 1.4e-06 8.9e-05 22.1 3.7 1 23 489 511 489 511 0.96

9 12 0.00017 0.01 15.7 4.1 1 23 517 539 517 539 0.97

10 12 1e-06 6.2e-05 22.6 0.8 1 23 545 567 545 567 0.98

11 12 2.1e-05 0.0013 18.5 0.2 1 23 571 593 571 593 0.99

12 12 0.0005 0.031 14.2 0.2 1 23 601 623 601 623 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.4	1.5e+02	2.6	0.4	1	12	108	119	108	128	0.88
2	12	0.015	0.93	9.5	1.9	1	20	239	258	239	260	0.95
3	12	4.5e-05	0.0028	17.5	1.0	2	23	265	286	265	286	0.97
4	12	0.0011	0.069	13.1	5.6	1	23	297	319	297	319	0.97
5	12	0.011	0.67	10.0	0.2	1	23	338	359	338	359	0.80
6	12	0.00026	0.016	15.1	0.1	2	23	365	386	364	386	0.95
7	12	3.3e-05	0.0021	17.9	4.8	1	23	461	483	461	483	0.99
8	12	1.4e-06	8.9e-05	22.1	3.7	1	23	489	511	489	511	0.96
9	12	0.00017	0.01	15.7	4.1	1	23	517	539	517	539	0.97
10	12	1e-06	6.2e-05	22.6	0.8	1	23	545	567	545	567	0.98
11	12	2.1e-05	0.0013	18.5	0.2	1	23	571	593	571	593	0.99
12	12	0.0005	0.031	14.2	0.2	1	23	601	623	601	623	0.97

Sequence Information

Coding Sequence: ATGGACACTGAAGAAACGCAACCAGATCAAAATTCTCTGGATTTCAAGATGTCCGAAGGACTCATCGGCGATGTTGGCGGAACGCAAAGAAGACTGCAGTCGTCGCAAGGATTGGTGGCTATTCCCATATCGAATCCGGATCGCAAGGCATTGATGGAGAAGAACATAATTGCTGTGTTACCAGATAATTCCGAACTTCTGGATGGGACCGAGACCACAACCCTGATCGATGTGGATCGTATAAATGAGGCAGGGGAAATGGACGAGGTTGATCTTCTACGTGTCAAGCGAGAGCTGTGCAAGTTTGAATCTGATGCTGTATACAGTTGCACCAGTTGCGAAATGAGCTTCAACTCTGTTTTGGATCACATCAAGCAATTCCACGATGGTCAGGAGGTTTTGCTAGAGATGGCGGAACAGATGAATGACCTGGCGACAACAAGTCCAATATCGGCAGTATCTGAAAACTCGGAGAATGTGGTGAACCCACGGCAGCGGCAAACAATGAACACACTGCGCACGGAAGAATGTGTGGACAGTGAGGGTAGGCTCTACACTAGAAAAGTAGTGCAAATTGAGAGATTCTGGGATCATACTCCGGTTCAGGTTACAACATCGCAATCGGCGAAGGCTCCGATGATCGAGAAATTCTTTTCGAACGTGGAGGGTGTCAAGGTACGAGACAAACGCCTGCCGACCGCATCGGTGCGAATGTACAAGTGCAATCAGTGCCTGCAGCAGTTCTCCAAATTGGGAAATTTTCGCGTGCACGCCTGTCTCGGTGGCAGTAATCGTTGCGAGCATTGCGACCAGAGCTTCGCAACCCCCAGAGCCTTGCAGCTCCACTCGAAGGTGCACGATAGCGAAGCTGATCCAAATCAGAAGACGTTTATCTGCACTACGTGCGGTACCGAATTTTGCTCCCACAAAAGCCTACGGCTGCACTCGAGGATGCATGCGCCAGTGAGAGCCAGACACGTCGATGCACCCGAAGGCACTCCTAACGCAACTTTTACTTGCCCCGAATGCGGTAAAACGCTCTCCGAGTCGTACAAAGACGCGCACATGGCGCTGCATACAGGTGACTCTGTGACTTGCACAATTTGCAACCGGAAATTTGATTCCGCGGACAGTTTAGCAATGCACGCGGCGGTGCACGTTGAGCAAACACTCTCGCGATCACCCACTCCACAAACTTTGATTTCATCTATTGTGGAGGCAACGACATCGGCGACAACTTCAACGACGATGCCAGCAGTGACAATGACCACAGCAATGGCGACAATGGCATCGACGATCGCCGTGACATCGTCAACCACATCGGTAACAACAGCGACGACAACGGTGACAACAGCAGATCCCGGCGACAGCCAGAAACCCTATCAGTGCCAGCATTGTGGACGCAGGTTCACCAGACCGCATGAGAAAGTCAAGCACGAACGAATTCACACTGGAGAAAAACCGCATGCTTGTGAGGTTTGCGGCAAGACCTTTCGCGTGTCCTACTGCCTGACCCTTCATATGCGCACGCATACAGGCGTGAGGCCATACGCTTGCCAGCACTGTGGAAAACGCTTCAAGGCGTCTTCCGTCTACAATCATCACCTACTGACGCACGGCGAGGAGCGCGCCTACACATGCCCATACTGCCCAAAGACGTTTAAGACACGGGTGCAGCTAGCCGGCCACAAGAACAGCCACACGAAGCCGTTCCGGTGCACTGAGTGCTCGCGACCGTTTGCATCGCTTTACGCAGTCCGCGCGCACATCCAGACTCATAAAAAAGACAACAATCTCAAGTTCAGCTGCTATGTATGCGGCGCTTCGTACGGCCGGGCATTCGCTCTCAAGGACCACCTGAAACAGCACGGCCAAGATATGCTGGCGCTACCGGAGCCAGCGCGGGAGGAGGAAGTACACCAGAACTTCCTCCTTGGCGAGGAGGAGATCGAGGAGGAAGAGTTCGCGGCCTCAAcgccgccaccaccgccgACTCCGCTTCCCATCGTCGCACGCCCCTCCGGCGTGGACGACACTGACTGA
Protein Sequence: MDTEETQPDQNSLDFKMSEGLIGDVGGTQRRLQSSQGLVAIPISNPDRKALMEKNIIAVLPDNSELLDGTETTTLIDVDRINEAGEMDEVDLLRVKRELCKFESDAVYSCTSCEMSFNSVLDHIKQFHDGQEVLLEMAEQMNDLATTSPISAVSENSENVVNPRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDHTPVQVTTSQSAKAPMIEKFFSNVEGVKVRDKRLPTASVRMYKCNQCLQQFSKLGNFRVHACLGGSNRCEHCDQSFATPRALQLHSKVHDSEADPNQKTFICTTCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLSESYKDAHMALHTGDSVTCTICNRKFDSADSLAMHAAVHVEQTLSRSPTPQTLISSIVEATTSATTSTTMPAVTMTTAMATMASTIAVTSSTTSVTTATTTVTTADPGDSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAVRAHIQTHKKDNNLKFSCYVCGASYGRAFALKDHLKQHGQDMLALPEPAREEEVHQNFLLGEEEIEEEEFAASTPPPPPTPLPIVARPSGVDDTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126922;
90% Identity: iTF_01476438;
80% Identity: -