Ccot005239.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- -
- Assembly
- GCA_001594065.1
- Location
- NW:1214231-1224115[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.15 9 6.4 1.4 1 23 291 313 291 313 0.91 2 13 0.00063 0.039 13.8 1.0 1 22 318 339 318 342 0.91 3 13 5.6e-05 0.0034 17.2 0.5 1 23 382 405 382 405 0.97 4 13 1.2e-06 7.5e-05 22.4 1.7 1 23 410 432 410 432 0.98 5 13 0.004 0.25 11.3 0.1 1 23 442 465 442 465 0.89 6 13 1e-06 6.4e-05 22.6 4.6 1 23 471 493 471 493 0.98 7 13 9.6e-06 0.00059 19.6 1.8 1 23 499 521 499 521 0.98 8 13 0.00031 0.019 14.8 2.3 1 23 527 549 527 549 0.96 9 13 1e-08 6.3e-07 28.9 0.9 1 23 555 577 555 577 0.99 10 13 4.6e-05 0.0028 17.4 5.8 1 23 583 605 583 605 0.98 11 13 3.8 2.3e+02 2.0 6.2 2 23 612 633 611 633 0.95 12 13 2.7e-06 0.00017 21.3 1.8 1 23 639 661 639 661 0.98 13 13 2e-07 1.3e-05 24.8 1.5 1 23 667 689 667 689 0.98
Sequence Information
- Coding Sequence
- ATGGTAGATATACATCTGTACGACTCAACGATCTGTCGTTTGTGTGCGGCGGAAAACGGCAACGAGCATCTGTTTATCAATGAGACAGGCGAGTCGGATCTGTGCTCGTTGGTGAATCGTTACTTGCCGTTGAAGatttatgaCGATGGAAAATTACCACGTACAATTTGTCCGGGTTGTAATATTCAACTGGAAGCAACTGTACAATTCTTTGAATTATTGGTGGCTGGTCAGCGTAAAATACGTGAACTATGGAAATATCAAATGGAGCAGCAGCGAAAAGCAGAACGTTTACGCAATAGAAAGGAAAATACAGAGTTTgaagaaatagaaatgaaTAGTACAGGTCATAATGAGAATGACCAATATGAGCAGCAAGTAGTTATTAaaattATGCCAGATGGATCTATGTACACAGCGGAACATGAAATGAGTTTGCAGATGGAAGGTTTAACTAAACCAAGAAGAAAACGCGGACGTCCACCTAAAGTCCACATGGATGCAGATTCAATgGTAACAAAAGAGAATCTTGGAGAAGATGTAAGTCAAGGTGAAGAAGAACTGGATGGTGATGGTAGACGCAGAAGGAAGCGTAAAGTTCCTAAAAgATTTTTAGAAGCAGTGCAGGGAAAAGAATTGGAAAGGATATTCAAAGAAGAAGGTGTGATTGATGACGAAGATGACGATTCTGAAATGTTTGACAATCCAAAAGATTTGTTAAAATCTAATCATAATGGTCAGGAAGGTATACATAATGAagAAGTAATAGGTCATCTTGAAACAGAAGAGGGTACAGACTTGGGTGAGGTAGTAATTATGAACCGTGGACGAATACGCTCGAAATCAAAACTGCGTcgtcgaaaaaataaatttacatgtcAACTCTGTGGCAGGGGTTTCCTACAACGTAGCAGATACATAGTACATAAGAGTTTCCACAAGGGTATCAAATATGAGTGTGTACAATGTAAGAAGCTATTTGATAGTAAAGATAATCTGACATTACATGAAAAGATGACTCAACATAATTCAAATTCTTTCGAAGAAAATGTTGAAACACAGGAATTGCAAGAGACGCACAGCACAGAACAGAATACTTCCACGATGGAATTAGAAGTAGCAGAAAATTCCAGAGATGCGATTTATATATGCAAGAAATGTGACAAGCAATTTGGAGTTAAACAGGAGTATGAATTGCACATGAGAGTCGAGCACGAGCAGCAAGAATTCACCTGTAATATTTGTGATAAGAACTTCACAAATCAATTGGatttaaaaacacatttaaCAACTCACAATGGGAAAAATAGATCGGATAAAGATTACGCTTGCGATATCTGCGGCAAGGTCTTAAACCATCCAAGTTCCGTCTTATATCACAAGGAAGCAGAACACAATAATGGACGCCGTTTCGTCTGTAATAAATGCAACAAAAGTTTTAAGCACAAACAATTGCTTCAACGACATCAGTTGGTGCATTCGGATAATCGGCCATACGCTTGTAAGTTTTGTAACTCAAGCTTCAAGACGAAGGCAAACTTAATCAATCATCAATCTACTCACACGGGCCACAAAAAGTATCTTTGTGAGATTTGCAAACAACAATTTGCGCACAAGACTAGTCTCACTTTGCATTACAGATGGCACAGTGGTCAAAAACCGTATACTTGTACGGTGTGTCAGAAGAGTTTCTCGCAGAATGGCAATTTGCAGGAACATATGCGCATTCACACCGGCGAAAAACCATACTGCTGTGATTTCTGTGGCCGGAAGTTTACTACGTCGTCACAATTCAAATTGCATGTGAAACGGCACACCGGTGAACGGCCGTGGAAATGCGAGTTCTGCTCGAAAAGTTTTTTACACAAAGATACATGGAAGTGTCACGTGCGCCGGCATAAGGGAGAACGTCCGTTCCAGTGTAATCAATGCAACCGCCGGTTTACAGAGCAATGGGCGCTGAAGAAACATCTTCGCTTGCACACTGGTGAAAAGCCTTATTCTTGCGATGTATGCGGTAAAGCTTTTGCCGACTGCTCAAATTTGACAAAACACAAAAAgGTACACAGGGAGAATAAGACATTAACTATGAAAAGATCGGAAGGATCTTCGATCGGCCAGGTATGGCAAATTCTGCCGAATTCACAAAACGAAAAGACATTCACTAATCAAATAATAGCCACTGACGAAACATCTAATGATGGAGtccaacaaattatttatgtatcttATCATACACAGGATTCTGAAGATCTTGATCAATCACAAACATTACATTTAgTTGATGCTAACATGATcaaaaagaaagatgaaatAGCAGTACAAGCGAATTCTTTGCCACGTTTAGAAACTAATGAAATTGTTACccataaagttataaataatgcaaCCAGCAATAATGAAGAACAGTCAGAGATTGAATTATCGGAATCGGATTTACAGTTGCAgATCACGGATGAATATGGAAATCCTATTCCATTGTCTATTCAAGAGGCTCGACAACTTTTCTCACAGGGACATTTTATCAGCCAATTGAACGATAGTCAGATCATTAAAGTTCATCCTGGAATGTTCGCGCAACAACTCCAAGCCTTAAATATCCATGTCGATGAAGATATTGCAGAAGAAAGCGGAATCACAATGCGTTCGAACACGTCTAAGAACATAGAGACAACATCAGCAATTCAAGAAGATGCGGAAGCAATCGTCCAGGCGCTTGAgGATGAGGATACCGATGCTACGACCGTTGCGACGATCAATCAACTGGGGAATATTGAGCAAGCTGGCTTACCAGATGGTGAACAAGCGATCGAATTCATGACTCAGGATGGACAGAAAGTTCGTGTCTTAACATCGTATCCTATCGATCCAATTCAGCTAGCTTCAGAGTACCTGACTATTGTGtag
- Protein Sequence
- MVDIHLYDSTICRLCAAENGNEHLFINETGESDLCSLVNRYLPLKIYDDGKLPRTICPGCNIQLEATVQFFELLVAGQRKIRELWKYQMEQQRKAERLRNRKENTEFEEIEMNSTGHNENDQYEQQVVIKIMPDGSMYTAEHEMSLQMEGLTKPRRKRGRPPKVHMDADSMVTKENLGEDVSQGEEELDGDGRRRRKRKVPKRFLEAVQGKELERIFKEEGVIDDEDDDSEMFDNPKDLLKSNHNGQEGIHNEEVIGHLETEEGTDLGEVVIMNRGRIRSKSKLRRRKNKFTCQLCGRGFLQRSRYIVHKSFHKGIKYECVQCKKLFDSKDNLTLHEKMTQHNSNSFEENVETQELQETHSTEQNTSTMELEVAENSRDAIYICKKCDKQFGVKQEYELHMRVEHEQQEFTCNICDKNFTNQLDLKTHLTTHNGKNRSDKDYACDICGKVLNHPSSVLYHKEAEHNNGRRFVCNKCNKSFKHKQLLQRHQLVHSDNRPYACKFCNSSFKTKANLINHQSTHTGHKKYLCEICKQQFAHKTSLTLHYRWHSGQKPYTCTVCQKSFSQNGNLQEHMRIHTGEKPYCCDFCGRKFTTSSQFKLHVKRHTGERPWKCEFCSKSFLHKDTWKCHVRRHKGERPFQCNQCNRRFTEQWALKKHLRLHTGEKPYSCDVCGKAFADCSNLTKHKKVHRENKTLTMKRSEGSSIGQVWQILPNSQNEKTFTNQIIATDETSNDGVQQIIYVSYHTQDSEDLDQSQTLHLVDANMIKKKDEIAVQANSLPRLETNEIVTHKVINNATSNNEEQSEIELSESDLQLQITDEYGNPIPLSIQEARQLFSQGHFISQLNDSQIIKVHPGMFAQQLQALNIHVDEDIAEESGITMRSNTSKNIETTSAIQEDAEAIVQALEDEDTDATTVATINQLGNIEQAGLPDGEQAIEFMTQDGQKVRVLTSYPIDPIQLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128422;
- 90% Identity
- -
- 80% Identity
- -