Ccot005172.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- -
- Assembly
- GCA_001594065.1
- Location
- NW:21161-32744[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 5.9e-06 0.00036 20.2 1.0 1 23 230 252 230 252 0.98 2 32 0.0085 0.52 10.3 3.7 1 23 275 298 275 298 0.96 3 32 0.00057 0.035 14.0 0.5 2 23 305 327 304 327 0.96 4 32 0.00084 0.052 13.5 0.2 1 21 347 367 347 368 0.95 5 32 0.0025 0.15 12.0 0.1 2 23 466 487 465 487 0.95 6 32 0.0036 0.22 11.5 0.3 1 23 493 516 493 516 0.91 7 32 0.00018 0.011 15.6 0.2 1 23 587 610 587 610 0.96 8 32 0.063 3.9 7.5 3.1 1 23 616 639 616 639 0.95 9 32 0.1 6.3 6.9 1.7 1 23 652 674 652 674 0.97 10 32 3.2e-05 0.002 17.9 0.9 3 23 719 740 718 740 0.96 11 32 2.7 1.7e+02 2.4 0.4 1 23 772 795 772 795 0.92 12 32 0.016 0.98 9.4 1.0 2 23 802 825 801 825 0.93 13 32 0.84 52 4.0 0.0 2 23 834 856 834 856 0.90 14 32 0.037 2.3 8.3 0.1 2 23 863 885 862 885 0.93 15 32 8.4e-05 0.0052 16.6 3.2 1 23 893 915 893 915 0.97 16 32 0.097 6 7.0 2.9 2 23 952 975 951 975 0.93 17 32 0.0002 0.012 15.4 3.3 1 23 978 1001 978 1001 0.97 18 32 0.00064 0.04 13.8 0.1 2 23 1008 1030 1007 1030 0.96 19 32 0.00085 0.053 13.4 3.9 1 21 1057 1077 1057 1078 0.95 20 32 0.0025 0.16 12.0 1.8 2 23 1092 1113 1091 1114 0.93 21 32 0.35 22 5.2 1.1 1 23 1117 1140 1117 1140 0.94 22 32 0.015 0.94 9.5 1.4 2 23 1147 1170 1146 1170 0.91 23 32 2.9 1.8e+02 2.3 0.2 2 23 1178 1200 1178 1200 0.94 24 32 3 1.9e+02 2.3 0.0 2 23 1207 1229 1206 1229 0.88 25 32 0.21 13 5.9 2.7 2 23 1238 1260 1238 1260 0.96 26 32 0.46 28 4.8 0.1 2 23 1266 1288 1265 1288 0.92 27 32 0.016 0.96 9.5 0.1 1 23 1349 1372 1349 1372 0.95 28 32 0.00016 0.0098 15.7 1.1 1 21 1400 1420 1400 1421 0.95 29 32 0.3 18 5.4 1.9 2 23 1520 1542 1519 1542 0.94 30 32 0.86 53 4.0 0.4 2 23 1549 1571 1548 1571 0.94 31 32 0.65 40 4.4 2.5 1 23 1582 1604 1582 1604 0.97 32 32 0.14 8.4 6.5 0.1 1 19 1608 1626 1608 1629 0.94
Sequence Information
- Coding Sequence
- ATGGCGACCGAGCCAAGGAGGAACTATGAGGAGCTGTGTCGCCTATGCGCTTCCTTCGATGCCGTTAGGATGCATATATTCGGCCAGGAAGGCAAGAATCGCCAACTCGTCGACAAGATTGAGACGTGTTTGCCGTTCAAGATAATGGAAGATGATTATTTGCCAAAAGTTCTGTGTTATCGATGTATGTACAACTTGGAAAATTTCTATGACTTTAGGACTGCGTGTGTTAATGCAGCTGTTTTGTTGGAAAGAAATAGGCCGAAGGAAGGCGTGAGTGATGACGATGCAAATAACACTGCGCAATCCTACAAGATGCACACGGtgtttcttaaaaaagaaaatatgccAGTACTTATCCCGGAAGCACCTGTAGTCAATCCTAATGCAGCATTGGGTACACCCCCGAGATTAAATTCGGATGGTGAAGCAGATCCTGAGATCGAAGAAATTCTTGACACAAGTGAAGGTACGGACGAAGcCACAGTGATCGACGATTCGGAAGATCGGCGATCGGAATATGAGATGGCATACGAAATGGACATGGAGACGAATCCTAGTGATTTCTTGGAAATGACCCCGATGGTAACCGAGGAAAATGAAGAGGAATCTAGTACAAACAATACGAGTGCCGTGACTACTCAAGATACTATGGTCTTTCCACATACGTCACAACAACATGAAGTCTATGTCTGTTCTCTATGCAACAAAGCATTCAGTTCCAAGGGTCACTTGTCTCTGCACGCGAGGATTCACGTGGGTGAGGGTGATGTGATTGGCGAAAGAGTAATTACCGATGATCATACTTCGTACCAACGACCGTATCAATGTGATCTTTGTCATAAATCGTATTCTACTGCGAAGCATCGCTGGGGACACGTTTCTACAACGCATCGGGGACATCCTGCAGTAACGTGTGCATATTGTTCCCGTATATACTCGACGCGATATAATCTCGATGAACATATAAAATCACGACATGCTGGGCTACCACCACCCTCAGAATTATCGGCTTCCGGGACTCGCACGGAAACACGTTACCAGTGCCAAACATGTCCGATGGTGTATAcgaatctaacaaatttcaatGCGCATCGTCAGATATGTCTCCAGGAACAACGTACAGATTTGTTAGGGCAAATCGAAGcgcaagataataaaatttttgccgATACATCCGACGTCTCGAGTATAGATTTTTATGACGAGACTAAAGACTTCAAGAATGCCGAGGCTAAATTGGCGAAAAATCCACAGTTAACCATATTGAAACAGGCGCTGACTAAAGGAGACATTTTAAAACGGAACTTCGATGAAGATGATTTGACATCTAGTGGCAAGccgacaaaaataattaagtcagAAGAAGGCGAGGCAAATCCTCAGAAGATATGGTATTGTGAAGCTTGTCCACAAAGTTTTACATCAGtggataatttaaaagaacatGAAATTAGACACGATGCCGAAAAGCCATATATTTGCATACTATGCAACAaagattttgttttgaaatcttCATTAAATAGGCACATTACAGTATTACATGGTGTTGATCCTACACCTATCATTGACAGTGATAAGTGTCTAAAGGCAACAGTCATGTCTCAAAATTGGAATAATCGAGTGGACGTCAGCGTTTACGAGcaaagtgaaataaaagaattaccaGAGCTCTCGTCGTCACCTgagataaatttagaaaatgatGACAAGGATTATAAGAATAACCATGAGAATATAGAAATCGAAACGGTATTTGTATGCGAGACTTGTAAGCGAGATTTTAATGATCGAGCGTCATTATGGCTGCACATACGAGCAATGCATAAGGAATATGCAGCATTTACCTGTGGAGTGTGTTTAAAGATGTGCTTTAATAATACACAACTTCAAAATCATGTATTTATGTACCACGGAAGATCTAAGCTTTTAATCTCGGAACAAAGAAGGTATAGTTGTAAGATATGTGGTAGACAGCATGACTCGAGAAAAAAGCTAATCACTCATGTCTCGATACACAATGTCGATCCTGCCTATGATCCAgcaatttttgtacaaatgaACAGTAATTACTATAATGAAAACTTAAATGGTAACGAAGGCAATGAACAAGTATTAGATTTCGAAGGAGAAGATGGCGAAAAAGTTGATTGttacatttgttataaatctTTTCCTACTGAGGATCATCTTATACGGCATCAGAGAAATGCTCATAAGTCTGACCAGATTTCGTTGGGGGATGCTACGGGTAGTAGAAATACTCTAAATGTTAATGGCAATGGTAATAGAGCGCAGTATCATTTGTTTTTCGTTTGCGAGGTATGTGGTAGTTCACATTCGAGCAAATGGGAACGTTGGTTGCATATCAACAACACACACAACAACGAACTTTCTATTAAATGTGAATTGGAAAGTTGCGGAAAGATATTTGCAACAAAATCGTTACGTAATGAACATCTTCAGCATCATGCGATACAAGGGCCCTCGCCAAACACCTGTGAGATATGTGGAAAATTATGGCCTACTCGTGTCGATTATTGGAAACACGTGATGGGCGTACATGCGGACACAGTGCCTCTAATTTGTGGCGTTTGTTTGAAAGTATTCTCCGATGTTATGCAATTGAGTGTACACGTCAAGGCGAAACATTGGCCATTAACCAGTGGCGATTTCTGTTGTGATATTTGCGGTAGACCATATTCCAATAAATCGAAAATGTCTCGGCATAGAAAGATCCATGGTTTGGAGGCGGCTATGGATGCTGCATGCGATAATAACAGTTTTAATGAAACGACCAATGAATCGGTGAAACCTGATCATAATAATGGTGCTTCAGAAATAGAACTACATTGCGAACAGTGCCCTGAACTCAGTTTCACGACATTGGACAGTTTGTGTAATCATCGACGGATAACGCACAATCTTTTCCCGTGCGATTTATGTAACAAATGTTACGGAAGAACATCACACTTATGGAAACATGTGAATAGGGTGCACAAAGGACATACAGATGTGACCTGTCCTTACTGCGCAAAGACAAGCGCGTCAAGGGATCATCTGGCAGcacatattgcaaaaattcatAGGTTTATGCCCGCAGTGAGTAAGGACAATCAAAACTGCGTTACTTCCAAGTCTTTGAATACAGACGATGGTGTTTTGCATTATTGCGAGAAATGTAACAAGGGATTCCATAAACGTTACTTGCTTCGTCGTCACATGAAGGGCTGTCAAAACTATCGTAAGGATCCTGGGGCATTGTTAACTCGTTGCCGTGCCTGCGAGAGGATATTCAAAGATCGTGCGAGTCTGCAGAAACATATTGAGAATCATCATACCACATATACTTGTCATTTGTGTAATGAGACAATCACTTCTAAGCTGGGCATCATGACACACAATCGTATCAATCATATGGATCATCCGGATTTGACGTGCGACTACCAGAGCTGTAAAAAACTCTTTCGCACCAAGGAAGATCTGGAATCTCATCGAAAAGATCACAAATATCATAGCAATCCGAACGTTTGTGATTTTTGCGGTGACAccgtagaaaataaattaaaattgaagatgCATGTATTATCATTGCATCGAAATGAGATCGGTGTATCTTGTGGAGTCTGTCTCATTCCGATGAAAGATcctaaagatttaaaaaaacacgTCGAAGCGGTGCATAGCAGCGTTCTTTCTCATCCAAACACGTGTCAGGTATGTGGTAAGCAATATGCATCCAAATGGAAGGCTTTTGATCACACGAAGAAGTGTCATGGCAAAGTTTTTCTCACGTGCAAACAGTGTCTAGCTGTTTTTACGGATGAGAATGATATACGCGATCACTATGAATATGTGCATAACGTCCCAAAGGACCAATTAGCTATTTTCGAATATAGAATGGATATTGGTGCAAAGAGGGAAGGTTGCGATACTCTTGATATTATTGTCAAGGAGGAACCGGATGATTTGGAGTTTGACGAAGAAATATGTGACGAAAGTTCGAATGATTCTCGCAAACGTAGATCGCCAAATGATACGTATGATTGCGAAATGTGTCCCGAGATCTTCCTAAATTCAGACACTCTCGCCAAGCATTATCAGAACGTCCATAATACAGATCCCGTCCGTATGTTCAAGAAATTCAGAAAGGATAATAGCGATAATAAGCGCAAGAtgagaaatagaaataacTTTGAATGCAAGAATTGTAAAAAGCAATTCTCTACCAAGACTCTGTTCTGGAATCacataaatgtatgtacacgACGAAACTCAATAGGTAGATTTGACATGCCGAATAATGTTCCAACATCAATTCTAGAATCTCATCTAAAAAACAACAATCAACGAGAAGAACCGGCACCGCTTACGAACGAATCTAACTTGAATATTCCCGACTTCAATCTATTCGAAGACATCAATTTACAATTGTCAGCCCAGAAACCTGTGCCGAATCTTATGCCATTGTCGCAGATGAAGGCGGCGAGTAACGGCAAATGCTCGAGAAAAGACTCGCGCAAGGTATATGATGAATCGACCAATACCGAGTGTACATGTGAAGTTTGTGGTAAACAATGGCCCGCCAAGAAGCATCTGTGGCAACATTTAATTCGTTTCCATCGCGCCGAAGCTGCTGTTACGTGTGGCGTATGCTTGAAGCTGTGTAAATCTTACCAAGACTTAGCCGACCACTTGAAGGCTGAGCATGCTCCAGTTTTATCGCCGGAGGGTAATAATTTCACTTGCAAAACATGCGGTAGATATCATAACGCGAGAAGTAAATTGCTGTTACACATGAGCATCCATATTGGGAACTTTCGGTGTCAAAAATGTCAGCAAGGTTTTGCAAGTGACGAAAAACTTATCGAGCATGCGACGAACTGCAATGGCAAATCAGAGTTTGAGAATAACACGGTGGCAGATGAAGATAATGCAAAGAATGACAACGACGAGAAGGGCAGTTTAATCGCCGACGAGACATCAGTCATTGAGGAAACAGAGGAAGTTGAGGAAGCTGATTACGAATCAGAAGGTGAAAGAAGTAGGGATATCCAAGACGAAGATAATTCGGAAAATAGCGAAGAAAATAATTCGGAAAATAGTGATGATTCAGACAGTGATAGTAATAGTAGTTCAAGCGAAGACGAAAACGAAGAAggagaagaggaagagaagggggaggagaaggaagaaggaaatgaaaatgaatCCGATACTACTAGTAGAGCGAGCGGTGATAGTATATCATCATGTAATTCCGATAGCGACGATGAATCGGATATAGATGAAACGGAAGTAGACGCGACGGAAAAGAAAACTGTACAATTGAACGATGTTAATAGATTCAGAATACATAGTAACGATATTCGAGAGAATATGCCAATAGAGACAAATTTCAAGGATCAGAAAACCGATCTTACATCCATAACAATGGTTGTAGAACAGACTAAACCGAGTAATTTAAATGATCTTTTGATTTCTAACGCACCGGGAAATATGAGTACCGACAAATTTGAGGCCTTTCGTGTCGTAAAGCTGCGACATGCTAAAACTGTAACGAGTGATGTAGACTCTGATAACgaagatgatgatgatgataacgAAGAAAATGATGAGGAAAATAACGAAaatgaagaagaggaagaagatgATGATCAGGATGAAGATGAAGATGAGGCTGATGCTGACGCTGAAGATAAAGTTGTAgcggaagaagaagaagaggaagaagaggatGATGAAGATGATGACGATGGACCGCCTGTATTAAGTCCAATAATGCCTTTGTTACCAGAAAACGAATCTGAGGAGTATAGCGGTACGACAGATCGCACTAGACATAAGCTTAGTCCAATGATTTCGCTGAGTATGGCTAAACATCTAGAGGAATGCGAAACACCAAATGACACAGACAACTTCTTTGCAGCTAATAACAATGATCTACCCGTAACATGGGACGAGAATTTGGATGATAACGTAATCAACAATGGCGATTGCAACTCCGATGTTGGAAACAGGGATGTGGAGAAAAGTGAAGAACTTGATGAGTatgtaaaaatggaaataaacgAAGGCGATGACTTCGAGGAAGATTCTGTGGATGAGAACGTAGTGAGAGAAGATGATGGAAACAATCCAGTGCATGAGGTGCATAATTTGGACGGAACTGTGTTAATGGTAACTAATGATGCGGAAGgtaatcaaattttgatagaaCAAAACGTGTTAGATATCGATAACGAGGACTCTAATGCCGAAACGGCGCAGTATATTTATCCCGAGAACACTTATGAGATCGAGGAAGAAGATTACGCAACGCAAAACGAAACTGACATTATGCAGACGGATGAAATGCAAGGTAATATATCCTACATTCAGGATATATCGGAGGATGAGGATAGTATGCAGGATGATATCGAGGAGACAAATAGTGATGTGCAAAAACAGTAG
- Protein Sequence
- MATEPRRNYEELCRLCASFDAVRMHIFGQEGKNRQLVDKIETCLPFKIMEDDYLPKVLCYRCMYNLENFYDFRTACVNAAVLLERNRPKEGVSDDDANNTAQSYKMHTVFLKKENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVIDDSEDRRSEYEMAYEMDMETNPSDFLEMTPMVTEENEEESSTNNTSAVTTQDTMVFPHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPSELSASGTRTETRYQCQTCPMVYTNLTNFNAHRQICLQEQRTDLLGQIEAQDNKIFADTSDVSSIDFYDETKDFKNAEAKLAKNPQLTILKQALTKGDILKRNFDEDDLTSSGKPTKIIKSEEGEANPQKIWYCEACPQSFTSVDNLKEHEIRHDAEKPYICILCNKDFVLKSSLNRHITVLHGVDPTPIIDSDKCLKATVMSQNWNNRVDVSVYEQSEIKELPELSSSPEINLENDDKDYKNNHENIEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKMCFNNTQLQNHVFMYHGRSKLLISEQRRYSCKICGRQHDSRKKLITHVSIHNVDPAYDPAIFVQMNSNYYNENLNGNEGNEQVLDFEGEDGEKVDCYICYKSFPTEDHLIRHQRNAHKSDQISLGDATGSRNTLNVNGNGNRAQYHLFFVCEVCGSSHSSKWERWLHINNTHNNELSIKCELESCGKIFATKSLRNEHLQHHAIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSVHVKAKHWPLTSGDFCCDICGRPYSNKSKMSRHRKIHGLEAAMDAACDNNSFNETTNESVKPDHNNGASEIELHCEQCPELSFTTLDSLCNHRRITHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHTDVTCPYCAKTSASRDHLAAHIAKIHRFMPAVSKDNQNCVTSKSLNTDDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTTYTCHLCNETITSKLGIMTHNRINHMDHPDLTCDYQSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAVHSSVLSHPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEYVHNVPKDQLAIFEYRMDIGAKREGCDTLDIIVKEEPDDLEFDEEICDESSNDSRKRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFRKDNSDNKRKMRNRNNFECKNCKKQFSTKTLFWNHINVCTRRNSIGRFDMPNNVPTSILESHLKNNNQREEPAPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQMKAASNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFASDEKLIEHATNCNGKSEFENNTVADEDNAKNDNDEKGSLIADETSVIEETEEVEEADYESEGERSRDIQDEDNSENSEENNSENSDDSDSDSNSSSSEDENEEGEEEEKGEEKEEGNENESDTTSRASGDSISSCNSDSDDESDIDETEVDATEKKTVQLNDVNRFRIHSNDIRENMPIETNFKDQKTDLTSITMVVEQTKPSNLNDLLISNAPGNMSTDKFEAFRVVKLRHAKTVTSDVDSDNEDDDDDNEENDEENNENEEEEEDDDQDEDEDEADADAEDKVVAEEEEEEEEDDEDDDDGPPVLSPIMPLLPENESEEYSGTTDRTRHKLSPMISLSMAKHLEECETPNDTDNFFAANNNDLPVTWDENLDDNVINNGDCNSDVGNRDVEKSEELDEYVKMEINEGDDFEEDSVDENVVREDDGNNPVHEVHNLDGTVLMVTNDAEGNQILIEQNVLDIDNEDSNAETAQYIYPENTYEIEEEDYATQNETDIMQTDEMQGNISYIQDISEDEDSMQDDIEETNSDVQKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01355612;
- 90% Identity
- -
- 80% Identity
- -