Ccot007073.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cyphomyrmex costatus
Gene Symbol
ZNF711
Assembly
GCA_001594065.1
Location
NW:8496-26120[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 5.4e-06 0.00033 20.4 3.2 1 23 18 40 18 40 0.99
2 21 0.079 4.9 7.2 0.4 1 21 46 66 46 69 0.90
3 21 5.2e-05 0.0032 17.3 5.5 1 23 88 110 88 110 0.99
4 21 0.014 0.89 9.6 1.1 1 21 116 136 116 139 0.90
5 21 4.8e-06 0.0003 20.5 6.7 1 23 158 180 158 180 0.99
6 21 2.7e-05 0.0017 18.2 5.9 1 23 228 250 228 250 0.99
7 21 0.0013 0.08 12.9 6.2 1 23 256 279 256 279 0.97
8 21 6.8e-05 0.0042 16.9 6.4 1 23 298 320 298 320 0.98
9 21 3.6 2.2e+02 2.0 1.6 1 23 326 349 326 349 0.92
10 21 2.1e-05 0.0013 18.5 7.2 1 23 368 390 368 390 0.98
11 21 0.075 4.6 7.3 0.5 1 21 396 416 396 419 0.90
12 21 4.1e-06 0.00025 20.7 3.3 1 23 438 460 438 460 0.99
13 21 2.3 1.4e+02 2.6 2.4 1 20 466 485 466 489 0.87
14 21 2.2e-05 0.0014 18.4 7.0 1 23 508 530 508 530 0.99
15 21 0.022 1.4 9.0 0.3 1 21 536 556 536 559 0.91
16 21 1.3e-05 0.0008 19.2 6.0 1 23 578 600 578 600 0.99
17 21 0.019 1.2 9.2 3.1 1 23 606 629 606 629 0.96
18 21 0.00021 0.013 15.3 7.2 1 23 648 670 648 670 0.97
19 21 1.7e-05 0.001 18.8 1.1 1 23 676 699 676 699 0.95
20 21 6.3e-05 0.0039 17.0 5.5 1 23 718 740 718 740 0.98
21 21 1.7e-05 0.001 18.8 1.6 1 23 746 769 746 769 0.98

Sequence Information

Coding Sequence
ATGAGGAAACGTTTCAAGTTTAAGAAGGCTTTACATTCTGAAGGTGTATTATACAAATGCGGAACGTGTCAAAAAGAGTTTAAGGACAAGACGAAACTCCAAATTCATAAGAGAACTCATACAggcgaaaaaccttatcaaTGCGAGTTTTGTAATGGTAAATTTGGATATAAAGGAGTGCTAAGACAACATGTGGTGGCAAAGCATAACAGTGATGAACGTTTCAAGTCTAACAAGGACCTATATACTGGAGGTGTATCATACAAATGCAaaacgtgtaataaagagtttattAACAAAACGAGTTTTCACAGGCATGAAAGAATTCATACAggcgaaaaaccttatcaatgcgaattttgtgaaaataaattcaaATATAAAGAAGTGCTAAGACAACATGTGGTGGCAAAGCATAACAGTGATGAACGTTTCAAGTCTAATAAGGACCTATACATTGGAGGTATATCATACAAATGCGGAACGTGTAATAAGGAGTTTAGGTACAAATCGCATTTTCGTAGACATGAAAGAACCCATACAggcgaaaaaccttatcaaTGCGAGTTTTGTAACGGTGAATTTGAATGTGAAGATGTACTAGGACATTATATGGTGGCAAAGCATAACGGTGATGAACGTTTCAAGTCTAATAAAGATCTATATTCTGGAGGTGTATCATACAAATGCAAAACGTGTAATAAAGACTTTAAGAACAAATCGGATTTTCATACGCATGAAAGAATTCATACAggcgaaaaaccttatcaatgcgagttttgtaaatataaatgtgtGCAAAAGGTTCATCTACGTAGTCACATGATATCAAAGCATAAAGATGATGAACGTTTCAAGTCTAATAAGGATCTATATGCTGGAGGTGTATTACACAAATGcggaacgtgtaataaagagtttaaggGCAAATCGAATTTGCATAAACATGAAAAAACTCATACAGGCGAAAAACCTTTTCAATGCgaattctgtatatataaatgtgtGGAAAAGGTACAGCTAAGTAGTCACGTGATATTAAAGCATAGCAATGATGAACGTTTCAAGTCTAATAAGGACCTATATGCTGGAGGTGTATTACACAAATGCCAAATctgtaataaagaatttaagtaCAAAAAGCATTTACAAGACCATGAAAGAACTCATACAAACGAAAAACCTTATCAATGCGAGTTTTGTAATGGTAAATTTGGATATAAAGAAGTGCTAAGACAACATGTGGTGGCAAAGCATAACAGTGATGAACGTTTCAAGTCTAATAAGGACCTATATACTGGAGGTGTATCATACAAATGCAaaacgtgtaataaagagtttattAACAAAACGAGTTTTCAGAGGCATGAAAGAATTCATACAggcgaaaaaccttatcaatgcgaattttgtgaaaataaatttagATGTAAAGAAGTGTTAAGACAACATGTGGTGGCAAAGCATAACAATGATGAACGTTTCAAGTCTAATAAGGACCTATATACTGGAGGTGTATCATACAAATGCAAAACGTGTAATAAGGAGTTTAAGTACAAAAGGAATTTACATAGTCATGAAAGAACTCATACCggcgaaaaaccttatcaaTGCGAGTTTTGTGTTGTTAAATTTGGATATAAAGAAGCGCTAAGACAACATGTGGTGGCAAAGCATAACAATGATGAACGTTTCAAGTCTAATAAGGACCTATATACTGGAGGTGTATCATACAAATGCAAaacgtgtaataaagaatttaagaacaaatcaaattttcatATGCATGAAAGAATTCATACAGGCGAAAGACCTTATCAATGCgagttttgtaaatataaatgtggGCAAAAGGTACAGCTAAGTAGTCACGTGATATCAAAGCATAGCAATGATGAACGTTTCAAGTCTAATAAGGACCTATATGCTGGAGGTGTATCACACAAATGCCAAATctgtaataaagagtttaggtacaaaaagaatttacaTAACCATGAAACAACTCATAAAAACGAAAAACCTTATGAATGTGATATTTGTGGTCACATGTCTAGGACAAAAGATAACTTAAGACAGCACTTGGTGAAAATGCATTACAATGATGAACGTTCCAAGTCTAAGAAGGATTTACATACTGAAGGTGTATCATACAATTGTggaacgtgtaataaagagtttaagaaCAAATCGTGTTTTCTTAGACATGAAAGAACTCATACAGGCGAAAATCCTTATCAATGCGAACTTtgtgaagaaaaatttagCCGGAAAGTTGGCCTAATACATCACGTGAAGACAAagcataataatgataaacgtttaaaaaggaaaattaaagtCTAA
Protein Sequence
MRKRFKFKKALHSEGVLYKCGTCQKEFKDKTKLQIHKRTHTGEKPYQCEFCNGKFGYKGVLRQHVVAKHNSDERFKSNKDLYTGGVSYKCKTCNKEFINKTSFHRHERIHTGEKPYQCEFCENKFKYKEVLRQHVVAKHNSDERFKSNKDLYIGGISYKCGTCNKEFRYKSHFRRHERTHTGEKPYQCEFCNGEFECEDVLGHYMVAKHNGDERFKSNKDLYSGGVSYKCKTCNKDFKNKSDFHTHERIHTGEKPYQCEFCKYKCVQKVHLRSHMISKHKDDERFKSNKDLYAGGVLHKCGTCNKEFKGKSNLHKHEKTHTGEKPFQCEFCIYKCVEKVQLSSHVILKHSNDERFKSNKDLYAGGVLHKCQICNKEFKYKKHLQDHERTHTNEKPYQCEFCNGKFGYKEVLRQHVVAKHNSDERFKSNKDLYTGGVSYKCKTCNKEFINKTSFQRHERIHTGEKPYQCEFCENKFRCKEVLRQHVVAKHNNDERFKSNKDLYTGGVSYKCKTCNKEFKYKRNLHSHERTHTGEKPYQCEFCVVKFGYKEALRQHVVAKHNNDERFKSNKDLYTGGVSYKCKTCNKEFKNKSNFHMHERIHTGERPYQCEFCKYKCGQKVQLSSHVISKHSNDERFKSNKDLYAGGVSHKCQICNKEFRYKKNLHNHETTHKNEKPYECDICGHMSRTKDNLRQHLVKMHYNDERSKSKKDLHTEGVSYNCGTCNKEFKNKSCFLRHERTHTGENPYQCELCEEKFSRKVGLIHHVKTKHNNDKRLKRKIKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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